Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 AL138900.3-201ENST00000607010 629 ntTSL 2 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC022919.1-201ENST00000624979 626 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC008691.1-209ENST00000642094 814 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 MUC2-202ENST00000613187 4845 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 ATP5A1P1-201ENST00000454088 1321 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 AL353796.1-201ENST00000561542 3241 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC006206.1-201ENST00000544842 3387 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.86□□□□□ -1.63
NKX3-1Q99801 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AC003973.3-201ENST00000624863 2822 ntBASIC4.86□□□□□ -1.63
NKX3-1Q99801 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
NKX3-1Q99801 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 CLEC2D-202ENST00000261340 935 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 BCL2A1-201ENST00000267953 1033 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 RNU6-40P-201ENST00000384254 107 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC016739.1-201ENST00000405359 345 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC078883.1-203ENST00000416080 654 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 REREP1Y-201ENST00000422655 198 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 RPS27AP6-201ENST00000427962 448 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 MTND4LP14-201ENST00000429447 288 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 NPM1P18-201ENST00000434232 732 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 REREP2Y-201ENST00000439103 200 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 Z99127.2-201ENST00000441426 334 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 ZNF736P11Y-201ENST00000442535 1213 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 ZNF736P12Y-201ENST00000443152 1243 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 ZNF736P4Y-201ENST00000454995 1243 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC005304.1-201ENST00000457609 405 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 UBFD1P1-201ENST00000473259 814 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC104109.1-201ENST00000498563 436 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC106864.1-201ENST00000510655 640 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 ASNSP4-201ENST00000511103 447 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 RFPL4AP3-201ENST00000515267 345 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 RN7SKP253-201ENST00000516424 309 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC067904.2-201ENST00000517322 1283 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 IGKV2-4-201ENST00000523070 340 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AP004609.2-201ENST00000532177 190 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 PCNAP4-201ENST00000532690 730 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 LINC00557-201ENST00000563184 1279 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC092121.1-201ENST00000569452 202 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC016839.1-201ENST00000578162 867 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC010632.3-201ENST00000611377 369 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC015922.4-201ENST00000612568 690 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC024884.1-201ENST00000620583 399 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC073869.7-201ENST00000640874 297 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 R3HDM1-204ENST00000410054 4442 ntTSL 2 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 FGG-205ENST00000407946 1636 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 LARS-201ENST00000274562 2213 ntTSL 2 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 AC068870.3-201ENST00000625077 2536 ntBASIC4.85□□□□□ -1.63
NKX3-1Q99801 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC4.85□□□□□ -1.63
NKX3-1Q99801 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
NKX3-1Q99801 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC4.84□□□□□ -1.63
NKX3-1Q99801 Z95331.1-201ENST00000623075 23112 ntBASIC4.84□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 98.5 ms