Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 RN7SKP81-201ENST00000365603 331 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 HMGB1P20-201ENST00000402555 677 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 GAPDHP42-201ENST00000406848 981 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 DNAJA1P5-201ENST00000440278 943 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 DCN-205ENST00000441303 519 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AL450996.1-201ENST00000445574 1202 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 LRRC37A14P-201ENST00000452297 462 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 AL133244.1-201ENST00000456007 258 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AP000797.2-201ENST00000475768 606 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 PSMA2P2-201ENST00000504319 686 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 GLYATL1P2-201ENST00000529451 510 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC105339.2-201ENST00000558342 1091 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC040173.1-201ENST00000572479 580 ntTSL 4 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC006272.2-201ENST00000594725 163 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC108865.2-201ENST00000606881 432 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 OR9K1P-202ENST00000641111 3217 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 C5orf42-201ENST00000425232 11199 ntAPPRIS P2 TSL 5 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC004158.1-201ENST00000564508 4319 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC106872.5-201ENST00000508856 1416 ntBASIC5.48□□□□□ -1.53
VPS39Q96JC1 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.48□□□□□ -1.53
VPS39Q96JC1 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 SOCS5P3-201ENST00000425115 1576 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 KCTD16-201ENST00000507359 13950 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 TCP11X1-202ENST00000622971 1372 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 DEFB4B-201ENST00000318157 332 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 RNA5SP394-201ENST00000364216 119 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AL139294.1-201ENST00000435739 512 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC005297.1-201ENST00000444765 862 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 OR52E7P-201ENST00000452394 933 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 VDAC2P4-201ENST00000452925 711 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 AP000547.1-201ENST00000454360 617 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC098859.2-201ENST00000506232 563 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 SCARNA20.4-201ENST00000516969 131 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC007639.1-201ENST00000577281 833 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 AL137072.1-201ENST00000603444 466 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 OR7M1P-201ENST00000608946 533 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 AL096712.1-201ENST00000614561 159 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC087821.1-201ENST00000623639 567 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 SAMMSON-209ENST00000641222 1100 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 AC073869.8-201ENST00000641806 335 ntBASIC5.47□□□□□ -1.53
VPS39Q96JC1 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS39Q96JC1 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
VPS39Q96JC1 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.53
VPS39Q96JC1 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.46□□□□□ -1.53
VPS39Q96JC1 AC083843.2-201ENST00000568248 6253 ntBASIC5.46□□□□□ -1.53
VPS39Q96JC1 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
VPS39Q96JC1 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
VPS39Q96JC1 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.46□□□□□ -1.53
VPS39Q96JC1 OR5B12-202ENST00000641921 1807 ntAPPRIS P1 BASIC5.46□□□□□ -1.53
VPS39Q96JC1 LINC01963-201ENST00000562038 3148 ntBASIC5.46□□□□□ -1.53
VPS39Q96JC1 NDUFS1-207ENST00000455934 3361 ntTSL 2 BASIC5.46□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 94.1 ms