Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 AC072062.1-204ENST00000437897 1132 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AL355314.1-201ENST00000453639 316 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 PPM1AP1-201ENST00000502740 1135 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 LINC00616-203ENST00000512536 568 ntTSL 4 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC018541.1-202ENST00000518687 584 ntTSL 4 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 MRPS16P1-201ENST00000523462 412 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 OR4A17P-201ENST00000526032 904 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC022075.3-201ENST00000539009 649 ntTSL 3 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC137768.1-201ENST00000549998 553 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC015818.6-201ENST00000584274 634 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC023762.1-201ENST00000603280 584 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AP005229.2-201ENST00000609980 697 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC004908.3-201ENST00000610248 625 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC126915.2-201ENST00000610957 190 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC004241.3-201ENST00000611728 517 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC009704.2-201ENST00000618739 483 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 OR1N1-202ENST00000619659 939 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AL133370.2-201ENST00000619934 439 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC091953.3-201ENST00000623220 236 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 MEG8-222ENST00000637332 1237 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 OR7A1P-202ENST00000641542 1158 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 ABCB11-201ENST00000263817 4775 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 LMO3-235ENST00000616247 3227 ntTSL 5 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 HSPA8P18-201ENST00000439846 1928 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC010624.4-201ENST00000597606 1351 ntBASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC7.05□□□□□ -1.28
SMC1BQ8NDV3 ZNF559-212ENST00000592896 1488 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 FSTL5-201ENST00000306100 4831 ntAPPRIS P3 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 ATF7IP2-204ENST00000396560 3665 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 CD200R1L-204ENST00000488794 1597 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 LRRC37A3-203ENST00000339474 2589 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 TFPI-202ENST00000339091 1088 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 RNU6-1251P-201ENST00000364502 107 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 RN7SKP29-201ENST00000410957 272 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 RMRPP5-201ENST00000411156 267 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 TRBV26OR9-2-201ENST00000432077 293 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 LINC00280-201ENST00000439525 448 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AL627224.1-201ENST00000448334 444 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 RPL7P45-201ENST00000455851 743 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 RN7SL481P-201ENST00000477764 299 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC124893.1-201ENST00000496247 545 ntTSL 5 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC018709.1-201ENST00000509111 700 ntAPPRIS P1 TSL 3 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC121161.1-201ENST00000510606 652 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC004923.2-201ENST00000529649 369 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC087894.1-201ENST00000538359 518 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC139697.1-201ENST00000548429 745 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AC011524.2-201ENST00000589198 399 ntTSL 3 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 MTCO3P22-201ENST00000603219 784 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 METTL8-218ENST00000638989 876 ntTSL 5 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 METTL8-219ENST00000640734 726 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 FO082842.1-201ENST00000423552 1370 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 CTNNA1P1-201ENST00000515849 2728 ntBASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 ZNF211-205ENST00000391703 2239 ntTSL 2 BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
SMC1BQ8NDV3 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 CLCA3P-203ENST00000490028 2781 ntBASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 AC034229.2-201ENST00000566945 2508 ntBASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 CMAHP-202ENST00000377993 1681 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 BABAM2-206ENST00000379632 1752 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 SRSF3-202ENST00000373715 4222 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 CEP85L-204ENST00000392500 1872 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 TTI1-202ENST00000373448 3958 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 DCSTAMP-201ENST00000297581 1953 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 SCOC-204ENST00000394205 1964 ntTSL 2 BASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 AC073365.1-203ENST00000641055 1992 ntBASIC7.03□□□□□ -1.28
SMC1BQ8NDV3 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 117.9 ms