Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 Vault.2-201ENST00000516519 98 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC023632.5-201ENST00000521010 491 ntTSL 3 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AP001372.4-201ENST00000524889 472 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC006512.2-201ENST00000543250 486 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 CD24P2-201ENST00000565486 219 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC087501.3-201ENST00000576477 513 ntTSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC007786.3-201ENST00000615154 596 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC015712.7-201ENST00000615211 635 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AC074099.1-201ENST00000634100 679 ntTSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 AL078595.2-201ENST00000605309 1780 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 PDZK1P1-202ENST00000425209 1350 ntBASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
CLIP4Q8N3C7 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 CYLD-207ENST00000564326 3259 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 GPX8-201ENST00000296734 3245 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 USP45-204ENST00000369233 2514 ntTSL 5 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 TRAPPC11-209ENST00000512476 2546 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC120036.2-201ENST00000509729 1474 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 OR4K17-201ENST00000315543 1032 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 RNA5SP500-201ENST00000364486 119 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 SNORA70.6-201ENST00000383934 134 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC096921.1-201ENST00000411661 375 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 NDUFS5P5-201ENST00000437256 321 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 RAB9AP5-201ENST00000437794 597 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 RAB9AP2-201ENST00000443911 597 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 TXNP2-201ENST00000443918 295 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AL021937.3-201ENST00000446543 361 ntTSL 2 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 MEMO1P4-201ENST00000453590 386 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 RN7SL72P-201ENST00000460697 269 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AL122020.1-201ENST00000472287 459 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 GLUD1P3-202ENST00000508551 200 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC108157.1-201ENST00000510511 539 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 RNA5SP438-201ENST00000516561 112 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 GTF2IP11-201ENST00000526931 420 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 NOX4-213ENST00000531342 696 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 GPRC5D-AS1-203ENST00000536029 466 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC137627.1-201ENST00000545761 289 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 LINC00907-210ENST00000593316 847 ntTSL 3 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 NANOGP3-201ENST00000605855 286 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AL591926.1-201ENST00000620542 217 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 PCBP1-AS1-360ENST00000630377 598 ntTSL 5 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 AC073136.1-201ENST00000449426 2884 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CLIP4Q8N3C7 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 95.6 ms