Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
FOXA1P55317 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
FOXA1P55317 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
FOXA1P55317 RNU1-149P-201ENST00000390870 161 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AC104333.2-201ENST00000422630 192 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 EI24P4-201ENST00000423683 1078 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.01□□□□□ -1.61
FOXA1P55317 AC009238.2-201ENST00000431026 355 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AL161722.2-201ENST00000434731 981 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 CYCSP12-201ENST00000437729 300 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.01□□□□□ -1.61
FOXA1P55317 CYCSP24-201ENST00000445119 316 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AL161636.2-201ENST00000445179 927 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.01□□□□□ -1.61
FOXA1P55317 RPL7P45-201ENST00000455851 743 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 RPL12P24-201ENST00000474907 486 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 RPL7P40-201ENST00000481703 745 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 RN7SL547P-201ENST00000490793 290 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.01□□□□□ -1.61
FOXA1P55317 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.01□□□□□ -1.61
FOXA1P55317 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.01□□□□□ -1.61
FOXA1P55317 AP006245.2-201ENST00000522004 300 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.01□□□□□ -1.61
FOXA1P55317 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.01□□□□□ -1.61
FOXA1P55317 AC027544.3-201ENST00000535082 757 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AC126177.5-201ENST00000549599 178 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
FOXA1P55317 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.01□□□□□ -1.61
FOXA1P55317 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.01□□□□□ -1.61
FOXA1P55317 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.01□□□□□ -1.61
FOXA1P55317 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.01□□□□□ -1.61
FOXA1P55317 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.01□□□□□ -1.61
FOXA1P55317 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.01□□□□□ -1.61
FOXA1P55317 AP005432.2-201ENST00000608162 586 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AL359513.1-201ENST00000614364 557 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
FOXA1P55317 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
FOXA1P55317 AC104623.2-202ENST00000623477 4002 ntBASIC5.01□□□□□ -1.61
FOXA1P55317 DLG1-210ENST00000422288 2854 ntTSL 5 BASIC5.01□□□□□ -1.61
FOXA1P55317 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
FOXA1P55317 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5□□□□□ -1.61
FOXA1P55317 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC5□□□□□ -1.61
FOXA1P55317 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5□□□□□ -1.61
FOXA1P55317 IPCEF1-203ENST00000422970 3267 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
FOXA1P55317 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
FOXA1P55317 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
FOXA1P55317 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5□□□□□ -1.61
FOXA1P55317 OR8V1P-201ENST00000395193 873 ntBASIC5□□□□□ -1.61
FOXA1P55317 RN7SKP286-201ENST00000410894 299 ntBASIC5□□□□□ -1.61
FOXA1P55317 AL592402.1-201ENST00000417161 440 ntTSL 4 BASIC5□□□□□ -1.61
FOXA1P55317 KCTD9P1-201ENST00000430462 1167 ntBASIC5□□□□□ -1.61
FOXA1P55317 CYCSP6-201ENST00000434498 302 ntBASIC5□□□□□ -1.61
FOXA1P55317 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5□□□□□ -1.61
FOXA1P55317 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5□□□□□ -1.61
FOXA1P55317 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC5□□□□□ -1.61
FOXA1P55317 RPL31P15-201ENST00000449770 338 ntBASIC5□□□□□ -1.61
FOXA1P55317 AC020779.1-201ENST00000478757 796 ntBASIC5□□□□□ -1.61
FOXA1P55317 RPL7P6-201ENST00000480903 738 ntBASIC5□□□□□ -1.61
FOXA1P55317 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5□□□□□ -1.61
FOXA1P55317 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5□□□□□ -1.61
FOXA1P55317 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5□□□□□ -1.61
FOXA1P55317 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5□□□□□ -1.61
FOXA1P55317 SUPT4H1-207ENST00000581540 668 ntTSL 2 BASIC5□□□□□ -1.61
FOXA1P55317 AC008521.2-201ENST00000591021 259 ntBASIC5□□□□□ -1.61
FOXA1P55317 AP005131.7-201ENST00000610087 611 ntBASIC5□□□□□ -1.61
FOXA1P55317 AC245041.2-202ENST00000613389 493 ntTSL 5 BASIC5□□□□□ -1.61
FOXA1P55317 AC127024.6-201ENST00000621598 424 ntBASIC5□□□□□ -1.61
FOXA1P55317 AL691477.1-201ENST00000624398 162 ntBASIC5□□□□□ -1.61
FOXA1P55317 AC119674.1-217ENST00000641942 1086 ntBASIC5□□□□□ -1.61
FOXA1P55317 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5□□□□□ -1.61
FOXA1P55317 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC5□□□□□ -1.61
FOXA1P55317 AC020743.2-201ENST00000639870 1370 ntTSL 5 BASIC5□□□□□ -1.61
FOXA1P55317 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5□□□□□ -1.61
FOXA1P55317 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
FOXA1P55317 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
FOXA1P55317 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC5□□□□□ -1.61
FOXA1P55317 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
FOXA1P55317 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.99□□□□□ -1.61
FOXA1P55317 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC4.99□□□□□ -1.61
FOXA1P55317 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC4.99□□□□□ -1.61
FOXA1P55317 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
FOXA1P55317 AL031985.1-201ENST00000392713 418 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 RNU6ATAC18P-201ENST00000408413 101 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC4.99□□□□□ -1.61
FOXA1P55317 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.99□□□□□ -1.61
FOXA1P55317 MED4-AS1-201ENST00000422483 542 ntTSL 2 BASIC4.99□□□□□ -1.61
FOXA1P55317 AL122019.1-201ENST00000438575 798 ntTSL 3 BASIC4.99□□□□□ -1.61
FOXA1P55317 AC144530.1-201ENST00000452862 555 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 SETP4-201ENST00000455717 868 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 AC068631.1-205ENST00000455926 409 ntTSL 3 BASIC4.99□□□□□ -1.61
FOXA1P55317 RPS27AP2-201ENST00000457576 465 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.99□□□□□ -1.61
FOXA1P55317 RN7SL466P-201ENST00000497546 295 ntBASIC4.99□□□□□ -1.61
FOXA1P55317 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
FOXA1P55317 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.99□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms