Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AP002512.4-201ENST00000641310 4672 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HOXA1P49639 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.83□□□□□ -1.64
HOXA1P49639 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 AC068775.1-202ENST00000538173 1602 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
HOXA1P49639 CASC19-261ENST00000641853 1638 ntBASIC4.83□□□□□ -1.64
HOXA1P49639 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
HOXA1P49639 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC4.82□□□□□ -1.64
HOXA1P49639 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 RBMS2-202ENST00000542360 1484 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 MUC2-202ENST00000613187 4845 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 AL645568.2-201ENST00000432815 1337 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 DEFB106A-201ENST00000335186 303 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 DEFB106B-201ENST00000335479 316 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 SNORA70.6-201ENST00000383934 134 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 MIR551B-201ENST00000384984 96 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 AL391422.1-201ENST00000402155 436 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 MTCO2P17-201ENST00000424336 677 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 OR6R1P-201ENST00000431838 940 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 PSMD10P2-201ENST00000432890 672 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 AL356475.1-201ENST00000440321 341 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 HMGN1P32-201ENST00000441744 256 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AL645936.1-201ENST00000441979 518 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AKR1C2-203ENST00000455190 1098 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC011396.2-201ENST00000515598 582 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AC107909.1-201ENST00000523226 595 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC131935.1-201ENST00000524621 333 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXA1P49639 AL590385.2-201ENST00000537821 553 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 GOLT1B-205ENST00000540141 1055 ntAPPRIS ALT1 TSL 4 BASIC4.82□□□□□ -1.64
HOXA1P49639 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXA1P49639 GOLGA8M-203ENST00000568033 557 ntTSL 4 BASIC4.82□□□□□ -1.64
HOXA1P49639 CCDC58P1-201ENST00000578567 430 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AC024267.2-201ENST00000582737 417 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC011468.3-201ENST00000597886 332 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 AL132655.1-201ENST00000601795 1153 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 AL096803.3-201ENST00000609032 532 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AL133370.2-201ENST00000619934 439 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AC074140.1-201ENST00000621617 208 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AC099654.9-201ENST00000637055 678 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC4.82□□□□□ -1.64
HOXA1P49639 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 Z95331.1-201ENST00000623075 23112 ntBASIC4.82□□□□□ -1.64
HOXA1P49639 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 TIPARP-205ENST00000486483 2150 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 BMPR2-201ENST00000374574 9683 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 LINC02153-202ENST00000522604 1644 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
HOXA1P49639 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.82□□□□□ -1.64
HOXA1P49639 LINC01787-201ENST00000435311 1994 ntTSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
HOXA1P49639 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 AC217777.1-201ENST00000570034 1471 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 FGF13-202ENST00000315930 19519 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC4.81□□□□□ -1.64
HOXA1P49639 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
HOXA1P49639 RNU6-1251P-201ENST00000364502 107 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 FCGR1B-202ENST00000369383 570 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 RPL11P3-201ENST00000395256 523 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 C6orf48-208ENST00000395788 815 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC104463.1-201ENST00000411431 365 ntTSL 5 BASIC4.81□□□□□ -1.64
HOXA1P49639 AL024507.1-201ENST00000412741 274 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 RPS15AP30-201ENST00000420976 390 ntBASIC4.81□□□□□ -1.64
HOXA1P49639 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC4.81□□□□□ -1.64
HOXA1P49639 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC4.81□□□□□ -1.64
HOXA1P49639 GYPE-202ENST00000437468 499 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
HOXA1P49639 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.81□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 134.5 ms