Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC021106.1-201ENST00000509020 1058 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 RNA5SP43-201ENST00000516559 110 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AC009643.1-201ENST00000532030 391 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC6.27□□□□□ -1.41
SCN4AP35499 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.27□□□□□ -1.41
SCN4AP35499 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC6.27□□□□□ -1.41
SCN4AP35499 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC6.27□□□□□ -1.41
SCN4AP35499 RAB27B-201ENST00000262094 7281 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SCN4AP35499 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SCN4AP35499 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SCN4AP35499 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SCN4AP35499 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
SCN4AP35499 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC6.26□□□□□ -1.41
SCN4AP35499 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
SCN4AP35499 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC6.26□□□□□ -1.41
SCN4AP35499 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC6.26□□□□□ -1.41
SCN4AP35499 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.26□□□□□ -1.41
SCN4AP35499 AL365220.1-201ENST00000432923 399 ntBASIC6.26□□□□□ -1.41
SCN4AP35499 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.26□□□□□ -1.41
SCN4AP35499 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.26□□□□□ -1.41
SCN4AP35499 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SCN4AP35499 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.26□□□□□ -1.41
SCN4AP35499 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.26□□□□□ -1.41
SCN4AP35499 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC6.26□□□□□ -1.41
SCN4AP35499 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
SCN4AP35499 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.25□□□□□ -1.41
SCN4AP35499 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.25□□□□□ -1.41
SCN4AP35499 AL390879.1-201ENST00000439143 386 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 RSU1P1-201ENST00000453416 441 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 AP005432.2-201ENST00000608162 586 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 CSDE1-203ENST00000358528 4076 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 NDUFS1-201ENST00000233190 11819 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC6.25□□□□□ -1.41
SCN4AP35499 TTC6-202ENST00000382320 1972 ntTSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.25□□□□□ -1.41
SCN4AP35499 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 AC100871.1-201ENST00000507871 1456 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 AC005005.4-201ENST00000623789 16698 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 RUNX1T1-205ENST00000436581 7454 ntTSL 5 BASIC6.25□□□□□ -1.41
SCN4AP35499 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC6.25□□□□□ -1.41
SCN4AP35499 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 ZNF714-202ENST00000456283 6812 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 AL031123.3-201ENST00000623345 1837 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.25□□□□□ -1.41
SCN4AP35499 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.25□□□□□ -1.41
SCN4AP35499 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.25□□□□□ -1.41
SCN4AP35499 OR7E125P-201ENST00000443450 846 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 AL354714.3-201ENST00000447284 493 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 RPL12P39-201ENST00000455456 496 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 snoU13.29-201ENST00000459370 104 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 PPIAP21-201ENST00000464473 501 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 OR11I1P-201ENST00000486033 954 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 AC100784.1-201ENST00000522790 310 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.25□□□□□ -1.41
SCN4AP35499 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC6.25□□□□□ -1.41
SCN4AP35499 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
SCN4AP35499 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC6.25□□□□□ -1.41
SCN4AP35499 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
SCN4AP35499 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC6.25□□□□□ -1.41
SCN4AP35499 AC005377.1-201ENST00000605126 456 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 MTCO1P1-201ENST00000624263 1081 ntBASIC6.25□□□□□ -1.41
SCN4AP35499 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.25□□□□□ -1.41
SCN4AP35499 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC6.24□□□□□ -1.41
SCN4AP35499 AC114774.1-201ENST00000507410 1770 ntBASIC6.24□□□□□ -1.41
SCN4AP35499 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.24□□□□□ -1.41
SCN4AP35499 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
SCN4AP35499 AF131216.1-201ENST00000498997 5856 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 GANC-201ENST00000318010 7781 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
SCN4AP35499 AC012213.2-201ENST00000562917 4597 ntBASIC6.24□□□□□ -1.41
SCN4AP35499 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC6.24□□□□□ -1.41
SCN4AP35499 RNA5SP90-201ENST00000364801 99 ntBASIC6.24□□□□□ -1.41
SCN4AP35499 RNU1-136P-201ENST00000384181 164 ntBASIC6.24□□□□□ -1.41
SCN4AP35499 RPL23AP17-201ENST00000401064 499 ntBASIC6.24□□□□□ -1.41
SCN4AP35499 ELOCP19-201ENST00000411919 318 ntBASIC6.24□□□□□ -1.41
SCN4AP35499 SLC9B1P4-201ENST00000421957 1288 ntBASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 85.3 ms