Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 AMY1C-201ENST00000370079 1632 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SHMT2P34897 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.27□□□□□ -1.57
SHMT2P34897 RN7SKP229-201ENST00000410465 302 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 AL133325.1-201ENST00000421090 382 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 SRSF1P1-201ENST00000424058 520 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 GSTM5P1-201ENST00000434751 660 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC022140.1-201ENST00000511029 565 ntTSL 3 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.27□□□□□ -1.57
SHMT2P34897 HMGB1P40-201ENST00000525121 540 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.27□□□□□ -1.57
SHMT2P34897 AC074101.1-201ENST00000637861 241 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.27□□□□□ -1.57
SHMT2P34897 SCN2A-203ENST00000375437 8792 ntAPPRIS ALT1 TSL 5 BASIC5.27□□□□□ -1.57
SHMT2P34897 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 AC007342.5-201ENST00000571340 2142 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC5.27□□□□□ -1.57
SHMT2P34897 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
SHMT2P34897 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 ADAM5-202ENST00000399789 1942 ntBASIC5.27□□□□□ -1.57
SHMT2P34897 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC5.26□□□□□ -1.57
SHMT2P34897 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SHMT2P34897 GVINP1-202ENST00000531871 7271 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 MIR133B-201ENST00000362210 119 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 RNU1-77P-201ENST00000390868 162 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 PPP2R2DP1-201ENST00000420526 637 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 DSTNP5-201ENST00000427921 523 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 CFL1P1-202ENST00000432948 411 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.26□□□□□ -1.57
SHMT2P34897 NPM1P19-201ENST00000450070 712 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 AC021106.1-201ENST00000509020 1058 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.26□□□□□ -1.57
SHMT2P34897 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.26□□□□□ -1.57
SHMT2P34897 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.26□□□□□ -1.57
SHMT2P34897 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.26□□□□□ -1.57
SHMT2P34897 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.26□□□□□ -1.57
SHMT2P34897 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.26□□□□□ -1.57
SHMT2P34897 FKBP1AP1-201ENST00000594588 318 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 IMMP1LP3-201ENST00000604197 224 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 AL359513.1-201ENST00000614364 557 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.26□□□□□ -1.57
SHMT2P34897 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.26□□□□□ -1.57
SHMT2P34897 AC073869.8-201ENST00000641806 335 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.26□□□□□ -1.57
SHMT2P34897 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
SHMT2P34897 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.26□□□□□ -1.57
SHMT2P34897 TCP11X1-202ENST00000622971 1372 ntBASIC5.26□□□□□ -1.57
SHMT2P34897 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
SHMT2P34897 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
SHMT2P34897 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.25□□□□□ -1.57
SHMT2P34897 CIR1P2-201ENST00000514821 1342 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 AP3B1-204ENST00000519295 3986 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SHMT2P34897 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHMT2P34897 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SHMT2P34897 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHMT2P34897 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHMT2P34897 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
SHMT2P34897 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.25□□□□□ -1.57
SHMT2P34897 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.25□□□□□ -1.57
SHMT2P34897 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
SHMT2P34897 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
SHMT2P34897 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 RNA5SP339-201ENST00000390987 122 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 RNA5SP487-201ENST00000410186 122 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC5.25□□□□□ -1.57
SHMT2P34897 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.25□□□□□ -1.57
SHMT2P34897 GAPDHP25-201ENST00000447061 1001 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.25□□□□□ -1.57
SHMT2P34897 AC011225.1-201ENST00000457751 369 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 AC092754.1-201ENST00000472975 479 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.25□□□□□ -1.57
SHMT2P34897 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.25□□□□□ -1.57
SHMT2P34897 AC091912.1-201ENST00000511351 248 ntBASIC5.25□□□□□ -1.57
SHMT2P34897 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 115.4 ms