Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 MGP-203ENST00000539261 1405 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
SMARCA1P28370 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC6.58□□□□□ -1.36
SMARCA1P28370 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 SLC30A7-203ENST00000370112 7898 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SMARCA1P28370 RNA5SP122-201ENST00000384457 108 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 ATP5F1P6-201ENST00000402768 767 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.58□□□□□ -1.36
SMARCA1P28370 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.58□□□□□ -1.36
SMARCA1P28370 SNRPFP2-201ENST00000440710 251 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC6.58□□□□□ -1.36
SMARCA1P28370 CASP12-206ENST00000446862 1196 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.58□□□□□ -1.36
SMARCA1P28370 RPL12P39-201ENST00000455456 496 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 DUTP1-201ENST00000493631 470 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC6.58□□□□□ -1.36
SMARCA1P28370 AC026782.2-201ENST00000510845 636 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 AC074087.1-201ENST00000512059 724 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 OSBPL9P3-201ENST00000534523 595 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC6.58□□□□□ -1.36
SMARCA1P28370 AC139697.1-201ENST00000548429 745 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 AC008147.3-201ENST00000548666 354 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.58□□□□□ -1.36
SMARCA1P28370 CD24P2-201ENST00000565486 219 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 AC233266.2-201ENST00000567067 528 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.58□□□□□ -1.36
SMARCA1P28370 MIR4311-201ENST00000580794 100 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC6.58□□□□□ -1.36
SMARCA1P28370 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC6.58□□□□□ -1.36
SMARCA1P28370 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.58□□□□□ -1.36
SMARCA1P28370 AC134980.1-208ENST00000640228 535 ntTSL 5 BASIC6.58□□□□□ -1.36
SMARCA1P28370 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 AC011503.2-201ENST00000594230 1500 ntBASIC6.58□□□□□ -1.36
SMARCA1P28370 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
SMARCA1P28370 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
SMARCA1P28370 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.58□□□□□ -1.36
SMARCA1P28370 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.58□□□□□ -1.36
SMARCA1P28370 ENPP2-208ENST00000522826 2667 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 ENPP2-201ENST00000075322 2651 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC6.58□□□□□ -1.36
SMARCA1P28370 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
SMARCA1P28370 ATXN7-208ENST00000484332 2741 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 GPR85-202ENST00000424100 2895 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 AL627171.1-201ENST00000618845 1308 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC6.57□□□□□ -1.36
SMARCA1P28370 TMSB4XP4-201ENST00000323496 618 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC6.57□□□□□ -1.36
SMARCA1P28370 AC092642.1-201ENST00000392417 425 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC6.57□□□□□ -1.36
SMARCA1P28370 AL035604.1-201ENST00000416481 531 ntTSL 3 BASIC6.57□□□□□ -1.36
SMARCA1P28370 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC6.57□□□□□ -1.36
SMARCA1P28370 MGAT2P2-201ENST00000427194 797 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 AP000281.1-201ENST00000444036 316 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 MOB1AP2-201ENST00000446060 614 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 SNRPCP3-201ENST00000474888 476 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 STRADBP1-201ENST00000478954 1281 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 OR9N1P-202ENST00000494289 481 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 GTF2IP9-201ENST00000502460 301 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 MTCO1P31-201ENST00000506355 492 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC6.57□□□□□ -1.36
SMARCA1P28370 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC6.57□□□□□ -1.36
SMARCA1P28370 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC6.57□□□□□ -1.36
SMARCA1P28370 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC6.57□□□□□ -1.36
SMARCA1P28370 DHFRP1-201ENST00000579682 559 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 MIR4505-201ENST00000582238 73 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC6.57□□□□□ -1.36
SMARCA1P28370 AC063944.3-201ENST00000609969 533 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 AC015922.4-201ENST00000612568 690 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 AC068870.3-201ENST00000625077 2536 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 CD69-201ENST00000228434 1676 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.57□□□□□ -1.36
SMARCA1P28370 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 YES1P1-201ENST00000418510 1628 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 AC092070.2-203ENST00000598377 3644 ntBASIC6.57□□□□□ -1.36
SMARCA1P28370 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC6.57□□□□□ -1.36
SMARCA1P28370 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC6.57□□□□□ -1.36
SMARCA1P28370 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.57□□□□□ -1.36
SMARCA1P28370 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC6.57□□□□□ -1.36
SMARCA1P28370 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 MRE11P1-201ENST00000464884 2127 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 LINC02019-201ENST00000608605 2060 ntBASIC6.56□□□□□ -1.36
SMARCA1P28370 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
SMARCA1P28370 ALG10B-201ENST00000308742 10253 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms