Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 MAPKBP1-217ENST00000627631 210 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 AC073869.10-201ENST00000642016 354 ntBASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
CCDC112Q8NEF3 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC063923.1-201ENST00000478982 1619 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC006600.2-201ENST00000624834 2506 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 FAM35A-201ENST00000298784 3402 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 RNFT1P3-201ENST00000340898 1052 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AL078599.1-201ENST00000402075 293 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 MGAT2P2-201ENST00000427194 797 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 BX119321.1-201ENST00000428912 797 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC046176.1-201ENST00000435260 1170 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC007998.1-201ENST00000474156 672 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 NIFKP7-201ENST00000503365 834 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 RNA5SP340-201ENST00000517132 107 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC022884.2-201ENST00000578535 580 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AL035587.1-202ENST00000607218 984 ntTSL 3 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC109583.2-201ENST00000617367 129 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 AC012564.1-201ENST00000636802 557 ntTSL 4 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 TET1P1-201ENST00000426627 2301 ntBASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
CCDC112Q8NEF3 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC005522.1-201ENST00000395416 346 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 SETP15-201ENST00000412724 337 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC022133.1-201ENST00000490961 571 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC090638.1-201ENST00000498296 909 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 SCARNA21.2-201ENST00000516600 166 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 OR8G3P-201ENST00000533406 921 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 BNIP3P1-201ENST00000547295 580 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC125612.1-201ENST00000547580 377 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 MIR3614-201ENST00000581261 86 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 FAM27E4-201ENST00000605259 342 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC127024.6-201ENST00000621598 424 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC099654.6-201ENST00000636487 512 ntBASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC5.91□□□□□ -1.46
CCDC112Q8NEF3 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 OR8A1-203ENST00000641670 5709 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 OR55B1P-203ENST00000641518 2602 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 OR2B6-201ENST00000244623 942 ntAPPRIS P1 BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 RNA5SP477-201ENST00000362639 119 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 EI24P3-201ENST00000399046 1062 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 DBIP1-201ENST00000401435 260 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 NPM1P38-201ENST00000403835 865 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 AL359643.1-201ENST00000404109 423 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 MIR1271-201ENST00000408537 86 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 RN7SKP286-201ENST00000410894 299 ntBASIC5.9□□□□□ -1.46
CCDC112Q8NEF3 EEF1B2P8-201ENST00000414101 671 ntBASIC5.9□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms