Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 MTND6P2-201ENST00000512226 524 ntBASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AC122688.1-201ENST00000541494 223 ntBASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AL627230.1-201ENST00000613077 211 ntBASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 MIR6780A-201ENST00000615089 68 ntBASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 AL591926.8-201ENST00000616876 211 ntBASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 SLCO1C1-209ENST00000545604 2557 ntTSL 2 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 SV2B-202ENST00000394232 11279 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
CCDC88AQ3V6T2 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RNA5SP428-201ENST00000365129 132 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 SNORA62-201ENST00000365493 153 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RPL11P3-201ENST00000395256 523 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC140172.1-201ENST00000502928 141 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 IGBP1P5-201ENST00000507524 1000 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 SCARNA20.4-201ENST00000516969 131 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC062004.1-201ENST00000518706 686 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 EDDM3DP-201ENST00000554692 434 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC004690.2-201ENST00000472838 1754 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 HAUS3-201ENST00000243706 5620 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RMDN2-201ENST00000234195 1985 ntTSL 2 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC005005.4-201ENST00000623789 16698 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RNU4-2-201ENST00000365668 141 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AL513533.1-201ENST00000453728 415 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 RN7SL690P-201ENST00000582087 240 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AP000919.1-201ENST00000582850 985 ntBASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC6.49□□□□□ -1.37
CCDC88AQ3V6T2 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 AC016745.2-201ENST00000608834 3443 ntBASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 RPL32P3-201ENST00000359025 275 ntBASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 Y_RNA.126-201ENST00000363382 111 ntBASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 RNF10P1-201ENST00000418589 369 ntBASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 AL391358.1-201ENST00000605342 190 ntBASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 PATJ-203ENST00000371158 8505 ntAPPRIS P1 TSL 5 BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 AC007159.1-201ENST00000566529 4706 ntBASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC6.48□□□□□ -1.37
CCDC88AQ3V6T2 AC132825.1-201ENST00000463573 2247 ntBASIC6.48□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms