Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.04□□□□□ -1.6
FOXA1P55317 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
FOXA1P55317 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.04□□□□□ -1.6
FOXA1P55317 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
FOXA1P55317 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.04□□□□□ -1.6
FOXA1P55317 CASC19-248ENST00000641674 1356 ntBASIC5.04□□□□□ -1.6
FOXA1P55317 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC5.03□□□□□ -1.6
FOXA1P55317 AC092747.4-201ENST00000620519 1861 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 RNA5SP90-201ENST00000364801 99 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.03□□□□□ -1.6
FOXA1P55317 RNA5SP339-201ENST00000390987 122 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 AL035079.1-201ENST00000405210 287 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 SDHDP6-201ENST00000414693 480 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.03□□□□□ -1.6
FOXA1P55317 NAP1L4P2-201ENST00000425958 899 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.03□□□□□ -1.6
FOXA1P55317 RPL12P11-201ENST00000439970 501 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 AL157385.1-201ENST00000446973 268 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.03□□□□□ -1.6
FOXA1P55317 AC100832.1-201ENST00000471945 383 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 EIF1P7-201ENST00000487533 337 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 COX6B1P2-201ENST00000489624 230 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 CLEC19A-204ENST00000493231 557 ntTSL 3 BASIC5.03□□□□□ -1.6
FOXA1P55317 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.03□□□□□ -1.6
FOXA1P55317 AC006349.1-201ENST00000555526 235 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.03□□□□□ -1.6
FOXA1P55317 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC5.03□□□□□ -1.6
FOXA1P55317 AL583832.1-201ENST00000603227 784 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 BNIP3P35-201ENST00000604530 490 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 AC104695.2-201ENST00000605056 775 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 MIR6778-201ENST00000617912 73 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.03□□□□□ -1.6
FOXA1P55317 MIR8080-201ENST00000622224 89 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
FOXA1P55317 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.03□□□□□ -1.6
FOXA1P55317 OR55B1P-203ENST00000641518 2602 ntBASIC5.03□□□□□ -1.6
FOXA1P55317 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.03□□□□□ -1.6
FOXA1P55317 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.03□□□□□ -1.6
FOXA1P55317 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC5.03□□□□□ -1.6
FOXA1P55317 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.02□□□□□ -1.61
FOXA1P55317 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
FOXA1P55317 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
FOXA1P55317 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 TMSB4XP4-201ENST00000323496 618 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 PEX12P1-201ENST00000400284 1048 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AL391422.1-201ENST00000402155 436 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AL390316.1-201ENST00000406279 553 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 MIR1282-201ENST00000408865 101 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AL390774.1-201ENST00000411924 246 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AC117434.1-201ENST00000419971 836 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 SETP9-201ENST00000423837 832 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.02□□□□□ -1.61
FOXA1P55317 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.02□□□□□ -1.61
FOXA1P55317 RPS26P41-201ENST00000450370 284 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.02□□□□□ -1.61
FOXA1P55317 AC005412.2-201ENST00000492004 341 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 MORF4L2P1-201ENST00000503761 858 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.02□□□□□ -1.61
FOXA1P55317 AC097173.1-201ENST00000505862 819 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.02□□□□□ -1.61
FOXA1P55317 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
FOXA1P55317 HMGN2P47-201ENST00000559378 272 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.02□□□□□ -1.61
FOXA1P55317 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 AC024267.4-201ENST00000580782 683 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.02□□□□□ -1.61
FOXA1P55317 SUGT1P3-202ENST00000604259 383 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC5.02□□□□□ -1.61
FOXA1P55317 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC5.02□□□□□ -1.61
FOXA1P55317 CYP4F35P-202ENST00000636121 390 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 SAMMSON-227ENST00000642114 1199 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.02□□□□□ -1.61
FOXA1P55317 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 LCMT1-AS2-202ENST00000565214 5666 ntBASIC5.02□□□□□ -1.61
FOXA1P55317 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
FOXA1P55317 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
FOXA1P55317 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
FOXA1P55317 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
FOXA1P55317 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.01□□□□□ -1.61
FOXA1P55317 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC5.01□□□□□ -1.61
FOXA1P55317 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.01□□□□□ -1.61
FOXA1P55317 U3.3-201ENST00000362986 216 ntBASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 144.2 ms