Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX2P35548 MIR4801-201ENST00000582704 82 ntBASIC5.94□□□□□ -1.46
MSX2P35548 CBX3P2-202ENST00000583365 535 ntBASIC5.94□□□□□ -1.46
MSX2P35548 RN7SL622P-201ENST00000585292 275 ntBASIC5.94□□□□□ -1.46
MSX2P35548 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC5.94□□□□□ -1.46
MSX2P35548 MIR132-201ENST00000591554 101 ntBASIC5.94□□□□□ -1.46
MSX2P35548 EXOSC3P2-201ENST00000594464 497 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC004890.3-201ENST00000605566 1095 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AL021997.1-201ENST00000605757 193 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC239868.4-201ENST00000608318 671 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC093388.1-201ENST00000609166 430 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC006924.1-201ENST00000610750 559 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC009163.6-201ENST00000612367 342 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC015922.4-201ENST00000612568 690 ntBASIC5.94□□□□□ -1.46
MSX2P35548 MIR6883-201ENST00000614952 78 ntBASIC5.94□□□□□ -1.46
MSX2P35548 VIPR1-AS1-221ENST00000626992 602 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 AC140479.4-205ENST00000636339 820 ntBASIC5.94□□□□□ -1.46
MSX2P35548 AC000095.2-202ENST00000637415 154 ntBASIC5.94□□□□□ -1.46
MSX2P35548 OR8G3P-202ENST00000641572 1255 ntBASIC5.94□□□□□ -1.46
MSX2P35548 OR7E91P-202ENST00000642062 1198 ntBASIC5.94□□□□□ -1.46
MSX2P35548 NBPF19-201ENST00000369227 3670 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 BX005019.1-201ENST00000561881 1810 ntBASIC5.94□□□□□ -1.46
MSX2P35548 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.94□□□□□ -1.46
MSX2P35548 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX2P35548 MBNL2-201ENST00000343600 4596 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 GPR89A-203ENST00000462900 1527 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX2P35548 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.94□□□□□ -1.46
MSX2P35548 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.94□□□□□ -1.46
MSX2P35548 ZNF699-203ENST00000591998 3358 ntAPPRIS P1 TSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 OR4F16-201ENST00000332831 995 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
MSX2P35548 RNU4-51P-201ENST00000364206 140 ntBASIC5.93□□□□□ -1.46
MSX2P35548 RNU4-4P-201ENST00000364588 130 ntBASIC5.93□□□□□ -1.46
MSX2P35548 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 TINAG-202ENST00000370864 692 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 AL034376.1-201ENST00000380106 484 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 U3.52-201ENST00000384034 216 ntBASIC5.93□□□□□ -1.46
MSX2P35548 MIR27A-201ENST00000385073 78 ntBASIC5.93□□□□□ -1.46
MSX2P35548 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 AL391419.1-201ENST00000398901 1275 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AL121977.1-201ENST00000401636 979 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AL021407.1-201ENST00000404531 386 ntBASIC5.93□□□□□ -1.46
MSX2P35548 RN7SKP30-201ENST00000411373 334 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 RAD23BP2-201ENST00000416003 1207 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC011233.1-201ENST00000422812 283 ntBASIC5.93□□□□□ -1.46
MSX2P35548 OR4F29-201ENST00000426406 995 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
MSX2P35548 RPL12P16-201ENST00000431098 498 ntBASIC5.93□□□□□ -1.46
MSX2P35548 CUBNP2-201ENST00000443534 1139 ntBASIC5.93□□□□□ -1.46
MSX2P35548 BMI1P1-201ENST00000445879 941 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC074327.1-201ENST00000448017 540 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 TRY2P-201ENST00000448860 689 ntBASIC5.93□□□□□ -1.46
MSX2P35548 BUD31P2-201ENST00000449374 300 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 VN1R32P-201ENST00000452234 905 ntBASIC5.93□□□□□ -1.46
MSX2P35548 OSTCP1-201ENST00000455507 450 ntBASIC5.93□□□□□ -1.46
MSX2P35548 OR4F3-201ENST00000456475 995 ntAPPRIS P1 BASIC5.93□□□□□ -1.46
MSX2P35548 GPX6-202ENST00000474923 716 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 FAM107B-217ENST00000478076 790 ntAPPRIS P1 TSL 4 BASIC5.93□□□□□ -1.46
MSX2P35548 RPS7P11-201ENST00000484240 586 ntBASIC5.93□□□□□ -1.46
MSX2P35548 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 AC109349.1-201ENST00000503299 758 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 AC093815.1-201ENST00000508637 280 ntBASIC5.93□□□□□ -1.46
MSX2P35548 VPS37A-208ENST00000521005 479 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 AC011410.1-201ENST00000524175 705 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 C14orf105-204ENST00000526336 598 ntTSL 4 BASIC5.93□□□□□ -1.46
MSX2P35548 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 ERP27-202ENST00000540097 993 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 TNFSF11-205ENST00000544862 818 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC5.93□□□□□ -1.46
MSX2P35548 AC090695.1-201ENST00000561269 1222 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC010546.1-201ENST00000569391 485 ntBASIC5.93□□□□□ -1.46
MSX2P35548 MIR4789-201ENST00000577469 82 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AP006587.6-201ENST00000582128 1091 ntBASIC5.93□□□□□ -1.46
MSX2P35548 RN7SL475P-201ENST00000583379 298 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC005726.5-201ENST00000585189 298 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 DYNAP-202ENST00000585973 1102 ntAPPRIS ALT2 TSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 TTN-AS1-245ENST00000592182 749 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 ZEB2-AS1-206ENST00000602006 572 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 AP004372.1-201ENST00000604842 844 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC103591.3-201ENST00000608684 209 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AL592494.3-201ENST00000609485 464 ntBASIC5.93□□□□□ -1.46
MSX2P35548 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC5.93□□□□□ -1.46
MSX2P35548 AP000255.1-201ENST00000610276 676 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC090246.1-201ENST00000616499 426 ntBASIC5.93□□□□□ -1.46
MSX2P35548 CLECL1-204ENST00000621400 611 ntAPPRIS ALT2 TSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 Z69908.1-201ENST00000622603 247 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AL359715.5-201ENST00000623431 443 ntBASIC5.93□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 88.8 ms