Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 AC009779.8-201ENST00000641684 4384 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 ANKS1B-216ENST00000549558 2268 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 FCHSD2-201ENST00000311172 4340 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 SNORD1C-201ENST00000363315 78 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 HSPA8P15-201ENST00000401676 786 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 RNGTTP1-201ENST00000420965 728 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.29□□□□□ -1.4
SCN4AP35499 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 AP000797.2-201ENST00000475768 606 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 TOMM22P4-201ENST00000511318 336 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 AC026402.1-201ENST00000513642 170 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 RN7SKP122-201ENST00000515923 296 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC6.29□□□□□ -1.4
SCN4AP35499 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC6.29□□□□□ -1.4
SCN4AP35499 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC6.29□□□□□ -1.4
SCN4AP35499 AL133481.2-203ENST00000607558 139 ntBASIC6.29□□□□□ -1.4
SCN4AP35499 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.29□□□□□ -1.4
SCN4AP35499 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
SCN4AP35499 ZNF160-203ENST00000429604 4336 ntAPPRIS P1 TSL 3 BASIC6.29□□□□□ -1.4
SCN4AP35499 FSCB-201ENST00000340446 2938 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
SCN4AP35499 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
SCN4AP35499 SYNPO2-206ENST00000610556 3934 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 SAMM50P1-201ENST00000455403 1399 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 ALG11-202ENST00000521508 2558 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 ATP5A1P4-201ENST00000556888 1605 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 ZNF724-201ENST00000418100 2764 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
SCN4AP35499 NBPF8-201ENST00000583271 5330 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC6.28□□□□□ -1.4
SCN4AP35499 MIR1182-201ENST00000408363 97 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 RPL12P17-201ENST00000432393 498 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 AP003080.1-202ENST00000526526 915 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 AL512782.1-201ENST00000603093 364 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 MSL3P1-202ENST00000440028 1468 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC6.28□□□□□ -1.4
SCN4AP35499 AL355488.2-201ENST00000609909 2850 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 TEX14-203ENST00000389934 4927 ntAPPRIS P4 TSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
SCN4AP35499 AC093297.3-201ENST00000607056 2517 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 SLC39A12-201ENST00000377369 2808 ntAPPRIS ALT1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC6.28□□□□□ -1.4
SCN4AP35499 BRWD3-201ENST00000373275 11381 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 CASC19-260ENST00000641828 2001 ntBASIC6.28□□□□□ -1.4
SCN4AP35499 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC6.28□□□□□ -1.4
SCN4AP35499 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
SCN4AP35499 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.28□□□□□ -1.4
SCN4AP35499 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
SCN4AP35499 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC6.28□□□□□ -1.4
SCN4AP35499 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.4
SCN4AP35499 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 HMGB3P7-201ENST00000400214 611 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 RPS17P17-201ENST00000419392 409 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 RIMKLBP2-201ENST00000424737 654 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AC092651.1-201ENST00000426110 312 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 RPS27AP6-201ENST00000427962 448 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AC007559.1-201ENST00000428736 355 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.27□□□□□ -1.41
SCN4AP35499 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 SNORA70.11-201ENST00000515987 138 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 SNORA70.13-201ENST00000516116 138 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AC087783.1-201ENST00000527135 564 ntTSL 4 BASIC6.27□□□□□ -1.41
SCN4AP35499 OR11H3P-201ENST00000554547 982 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 AC135068.5-201ENST00000624197 983 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 OR4F13P-202ENST00000560066 2054 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.27□□□□□ -1.41
SCN4AP35499 FGFR1OP-202ENST00000366847 14166 ntAPPRIS P4 TSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.27□□□□□ -1.41
SCN4AP35499 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
SCN4AP35499 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
SCN4AP35499 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.27□□□□□ -1.41
SCN4AP35499 LINC01198-201ENST00000416521 500 ntTSL 3 BASIC6.27□□□□□ -1.41
SCN4AP35499 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AC073410.1-201ENST00000435125 589 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 ATP5A1P7-201ENST00000453978 1279 ntBASIC6.27□□□□□ -1.41
SCN4AP35499 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC6.27□□□□□ -1.41
SCN4AP35499 HMGN2P25-201ENST00000486956 268 ntBASIC6.27□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 158.9 ms