Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 DZANK1-203ENST00000357236 3739 ntAPPRIS ALT2 TSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 LINC01592-202ENST00000518540 2367 ntTSL 2 BASIC6.67□□□□□ -1.34
COL8A1P27658 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 SLC10A7-201ENST00000335472 2798 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 TRIM2-201ENST00000338700 6735 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 DDX6-207ENST00000617381 2883 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 NBPF19-206ENST00000621744 14425 ntTSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 AC108451.1-201ENST00000558208 2520 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
COL8A1P27658 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC6.67□□□□□ -1.34
COL8A1P27658 BICC1-202ENST00000373886 5475 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 GTF2H1-201ENST00000265963 2982 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 BCL2L14-204ENST00000396367 1886 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 CLEC12A-201ENST00000304361 1549 ntAPPRIS P4 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 GFRAL-201ENST00000340465 1911 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 AC013444.1-201ENST00000428909 1904 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 MAP3K20-208ENST00000539448 2312 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 CASC23-201ENST00000534076 1563 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 RSRC1-203ENST00000464171 2411 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 ENOX2-207ENST00000610637 2422 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 NFAT5-208ENST00000566899 4914 ntAPPRIS ALT1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 XIST-206ENST00000434839 2865 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 WDR89-204ENST00000620954 2935 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COL8A1P27658 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 PLEKHS1-203ENST00000369309 2534 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 ZNF225-206ENST00000592780 2538 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 RNASEL-201ENST00000367559 4238 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 OR52B1P-201ENST00000316506 909 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 OR2T6-201ENST00000355728 927 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COL8A1P27658 CISD1P1-201ENST00000393907 327 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 NACAP7-201ENST00000407371 609 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AL078590.1-201ENST00000412602 479 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 HMGB3P31-201ENST00000413333 595 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC009302.1-201ENST00000417147 390 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AL445430.2-201ENST00000423149 686 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 AL512363.1-201ENST00000425089 586 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC134879.1-201ENST00000426062 394 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 GAPDHP19-201ENST00000431768 1005 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AL133465.1-201ENST00000432942 512 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 DBIL5P2-201ENST00000443827 253 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AC023274.2-201ENST00000445264 521 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AC004593.1-201ENST00000446246 798 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 LAPTM4BP1-201ENST00000447781 690 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AL390728.3-201ENST00000452704 270 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 RPL31P11-202ENST00000454082 372 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 MTCO3P20-201ENST00000454926 688 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 LINC00533-201ENST00000456103 537 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AC073594.1-201ENST00000462065 364 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 L3HYPDH-206ENST00000487285 700 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 RNU6-943P-201ENST00000516960 98 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.66□□□□□ -1.34
COL8A1P27658 AAMDC-203ENST00000525034 511 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 OR8A2P-201ENST00000528631 952 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 OR4C7P-201ENST00000533375 919 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 NANOGNBP2-201ENST00000544753 553 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AC011595.1-201ENST00000548901 753 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC126177.6-201ENST00000550420 1009 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC091117.2-201ENST00000560324 542 ntTSL 4 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC005668.1-201ENST00000571142 476 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 RN7SL473P-201ENST00000580341 299 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC074135.1-202ENST00000600223 563 ntTSL 3 BASIC6.66□□□□□ -1.34
COL8A1P27658 AC013244.1-201ENST00000604279 193 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 TAS2R6P-201ENST00000605022 826 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 AC113194.1-201ENST00000606037 500 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 CERS6-AS1-209ENST00000609766 642 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 ACACA-232ENST00000614438 569 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 MIR6778-201ENST00000617912 73 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 uc_338.37-201ENST00000620113 186 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
COL8A1P27658 PDAP1-205ENST00000626285 120 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 JAML-213ENST00000640745 951 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 RNF214-206ENST00000531452 2695 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 PIK3AP1-203ENST00000371110 3151 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 CHIC1-201ENST00000373502 4158 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 SGK1-223ENST00000528577 1850 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 DAAM1-201ENST00000360909 4227 ntAPPRIS ALT2 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 AL512504.2-201ENST00000445455 1909 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 ZNF2-204ENST00000617923 3885 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 PIGN-225ENST00000638435 4382 ntTSL 5 BASIC6.66□□□□□ -1.34
COL8A1P27658 UBE2V1-204ENST00000371677 2459 ntTSL 2 BASIC6.66□□□□□ -1.34
COL8A1P27658 PDE4D-208ENST00000502484 2478 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 AC105046.1-201ENST00000566457 4997 ntBASIC6.66□□□□□ -1.34
COL8A1P27658 PPP1R1C-202ENST00000409137 3004 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
COL8A1P27658 AMBN-202ENST00000449493 1512 ntAPPRIS ALT2 TSL 5 BASIC6.66□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 82.6 ms