Protein–RNA interactions for Protein: Q9BY12

SCAPER, S phase cyclin A-associated protein in the endoplasmic reticulum, humanhuman

Predictions only

Length 1,400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCAPERQ9BY12 PAICS-201ENST00000264221 3339 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
SCAPERQ9BY12 USP8-204ENST00000425032 3559 ntTSL 2 BASIC8□□□□□ -1.13
SCAPERQ9BY12 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC8□□□□□ -1.13
SCAPERQ9BY12 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC8□□□□□ -1.13
SCAPERQ9BY12 FRS2-209ENST00000550389 6600 ntAPPRIS P1 TSL 1 (best) BASIC8□□□□□ -1.13
SCAPERQ9BY12 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 OR4F13P-202ENST00000560066 2054 ntBASIC7.99□□□□□ -1.13
SCAPERQ9BY12 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 P2RY10P2-201ENST00000416730 913 ntBASIC7.99□□□□□ -1.13
SCAPERQ9BY12 DNAJC19P7-201ENST00000428811 344 ntBASIC7.99□□□□□ -1.13
SCAPERQ9BY12 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AC063943.1-201ENST00000465434 453 ntBASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AC140172.1-201ENST00000502928 141 ntBASIC7.99□□□□□ -1.13
SCAPERQ9BY12 LINC02218-202ENST00000504998 582 ntTSL 4 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 OR4A6P-201ENST00000534364 970 ntBASIC7.99□□□□□ -1.13
SCAPERQ9BY12 GCSHP4-201ENST00000538792 439 ntBASIC7.99□□□□□ -1.13
SCAPERQ9BY12 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC7.99□□□□□ -1.13
SCAPERQ9BY12 DOCK9-203ENST00000376460 7549 ntAPPRIS P2 TSL 5 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 EEF1A1P33-201ENST00000554413 1362 ntBASIC7.98□□□□□ -1.13
SCAPERQ9BY12 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 RPL5P25-201ENST00000441148 775 ntBASIC7.98□□□□□ -1.13
SCAPERQ9BY12 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 RPL7P40-201ENST00000481703 745 ntBASIC7.98□□□□□ -1.13
SCAPERQ9BY12 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 ZNF254-207ENST00000613065 4244 ntTSL 3 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 FRMD4B-210ENST00000478263 3761 ntTSL 1 (best) BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 DDX1-208ENST00000621973 2183 ntTSL 5 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 CASP10-205ENST00000360132 5814 ntTSL 5 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC7.98□□□□□ -1.13
SCAPERQ9BY12 PTPN3-202ENST00000374541 6703 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AC006206.1-201ENST00000544842 3387 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 GLULP6-201ENST00000399502 913 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 RPS16P5-201ENST00000406501 404 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 RNU2-50P-201ENST00000410494 143 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 KRT8P51-201ENST00000438938 274 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 CYCSP42-201ENST00000450823 238 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AL132712.2-201ENST00000556653 127 ntTSL 3 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AC005252.1-201ENST00000604518 1063 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 MTCO1P1-201ENST00000624263 1081 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AC232271.1-201ENST00000602455 2715 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 SDAD1P1-202ENST00000524156 2051 ntBASIC7.97□□□□□ -1.13
SCAPERQ9BY12 FHL5-201ENST00000326771 2031 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC7.97□□□□□ -1.13
SCAPERQ9BY12 DMD-202ENST00000343523 5623 ntTSL 5 BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 C6orf163-202ENST00000388923 1308 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 ZNF969P-201ENST00000510345 2341 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 SLC1A2-202ENST00000395750 11538 ntAPPRIS ALT1 TSL 1 (best) BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 RPL32P3-201ENST00000359025 275 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 RPL7P58-201ENST00000402913 758 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 AC021106.1-201ENST00000509020 1058 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 AC034205.1-201ENST00000520621 638 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 PDCD6IPP2-207ENST00000566321 1069 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 AC009237.13-201ENST00000603193 276 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 AC016717.3-201ENST00000624730 554 ntBASIC7.96□□□□□ -1.13
SCAPERQ9BY12 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
SCAPERQ9BY12 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 119.7 ms