Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
CCDC42Q96M95 ZNF429-209ENST00000618549 1889 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 SMG1P4-204ENST00000523028 4131 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC211486.3-201ENST00000412694 621 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 RPL34P3-201ENST00000421454 338 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 GAPDHP25-201ENST00000447061 1001 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC105399.1-202ENST00000447303 205 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 BX842559.2-201ENST00000451418 605 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC068993.1-201ENST00000546724 589 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 AL138974.1-201ENST00000551227 741 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC009167.1-201ENST00000568317 579 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC136443.4-201ENST00000568759 579 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 MIR5010-201ENST00000582846 120 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 LINC01835-202ENST00000589345 450 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC006272.2-201ENST00000594725 163 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 MIR6889-201ENST00000613185 59 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 MIR7109-201ENST00000613748 65 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC099654.11-201ENST00000638857 294 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC073869.7-201ENST00000640874 297 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC120036.2-201ENST00000509729 1474 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 AC006210.2-201ENST00000367074 1545 ntBASIC5.68□□□□□ -1.5
CCDC42Q96M95 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.68□□□□□ -1.5
CCDC42Q96M95 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC42Q96M95 CASC19-248ENST00000641674 1356 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC42Q96M95 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC42Q96M95 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 RNA5SP46-201ENST00000362370 120 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 TOMM7-203ENST00000405021 455 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 HMGN1P20-201ENST00000411849 300 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 AL355581.1-201ENST00000415964 830 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC093155.2-201ENST00000420734 937 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC104333.2-201ENST00000422630 192 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC211433.1-202ENST00000434256 1187 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC42Q96M95 CLUHP1-201ENST00000435012 1190 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 RN7SL189P-201ENST00000468631 289 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 CREM-238ENST00000488741 651 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 YWHABP2-201ENST00000540201 713 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC114947.2-202ENST00000569313 643 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 RN7SL708P-201ENST00000580952 299 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC079315.1-201ENST00000602952 623 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 AL138895.2-201ENST00000603019 178 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC42Q96M95 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 DST-202ENST00000312431 17756 ntAPPRIS P2 TSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC42Q96M95 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
CCDC42Q96M95 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC100778.3-201ENST00000580060 1750 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 AL132656.3-201ENST00000606384 1595 ntBASIC5.67□□□□□ -1.5
CCDC42Q96M95 AC063976.2-201ENST00000425667 3556 ntBASIC5.66□□□□□ -1.5
CCDC42Q96M95 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC42Q96M95 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC42Q96M95 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC42Q96M95 PPIG-201ENST00000260970 6368 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC42Q96M95 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC42Q96M95 TRGV10-201ENST00000390341 512 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC42Q96M95 AC007738.1-201ENST00000413892 348 ntBASIC5.66□□□□□ -1.5
CCDC42Q96M95 EEF1B2P8-201ENST00000414101 671 ntBASIC5.66□□□□□ -1.5
CCDC42Q96M95 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC42Q96M95 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC42Q96M95 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC5.66□□□□□ -1.5
CCDC42Q96M95 TAS2R39-201ENST00000446620 1017 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
CCDC42Q96M95 RABGAP1L-216ENST00000486220 772 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 69.9 ms