Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AC103853.1-201ENST00000520588 649 ntTSL 5 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AP004607.2-201ENST00000533949 322 ntBASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AC069307.1-201ENST00000602820 447 ntBASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AC009163.6-201ENST00000612367 342 ntBASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AL078621.3-201ENST00000623707 2042 ntBASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 DPY19L2P2-203ENST00000435536 1858 ntBASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.5□□□□□ -1.53
SHROOM3Q8TF72 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 TRBV24-1-201ENST00000390397 381 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 COX7B2-202ENST00000396533 617 ntAPPRIS P2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 GPS2P1-201ENST00000411761 986 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 PSMD10P3-201ENST00000437000 448 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 CEACAMP9-201ENST00000442990 513 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 EIF4EBP2P1-201ENST00000450009 343 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 HIGD1AP14-201ENST00000507617 282 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC109464.1-201ENST00000511091 819 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 MIR4330-201ENST00000579077 105 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC087283.1-201ENST00000604029 1074 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 MTCO1P1-201ENST00000624263 1081 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 ERC1-222ENST00000589028 9202 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 RN7SL184P-201ENST00000488308 297 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC137768.1-201ENST00000549998 553 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AL356608.1-201ENST00000610034 820 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 uc_338.18-201ENST00000615451 175 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 MIR6837-201ENST00000620884 64 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC105105.5-201ENST00000622635 1294 ntBASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
SHROOM3Q8TF72 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 RNU1-149P-201ENST00000390870 161 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 RNA5SP339-201ENST00000390987 122 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 CYCSP12-201ENST00000437729 300 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC007686.1-201ENST00000488511 463 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 GTF2F2P1-201ENST00000511083 675 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC013644.1-202ENST00000523166 499 ntTSL 2 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 BLZF2P-201ENST00000553776 1130 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC087763.1-201ENST00000603391 286 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC026367.3-201ENST00000619032 590 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 MIR6758-201ENST00000620653 63 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC092747.4-201ENST00000620519 1861 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 SCN2A-209ENST00000636071 8881 ntAPPRIS ALT1 TSL 5 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 SCN2A-214ENST00000636985 8856 ntTSL 5 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 AC239868.2-201ENST00000564237 4527 ntBASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.48□□□□□ -1.53
SHROOM3Q8TF72 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
SHROOM3Q8TF72 RPL23P2-201ENST00000320371 421 ntBASIC5.47□□□□□ -1.53
SHROOM3Q8TF72 RPL21P67-201ENST00000402896 478 ntBASIC5.47□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms