Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 AC234775.3-201ENST00000564612 656 ntBASIC5.09□□□□□ -1.59
LIM2P55344 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC5.09□□□□□ -1.59
LIM2P55344 AC244107.2-201ENST00000611773 76 ntBASIC5.09□□□□□ -1.59
LIM2P55344 AC026367.3-201ENST00000619032 590 ntBASIC5.09□□□□□ -1.59
LIM2P55344 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.09□□□□□ -1.59
LIM2P55344 SAMMSON-209ENST00000641222 1100 ntBASIC5.09□□□□□ -1.59
LIM2P55344 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.09□□□□□ -1.59
LIM2P55344 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
LIM2P55344 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
LIM2P55344 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
LIM2P55344 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC5.09□□□□□ -1.59
LIM2P55344 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.09□□□□□ -1.59
LIM2P55344 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.09□□□□□ -1.6
LIM2P55344 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 AL121839.2-201ENST00000565058 6943 ntBASIC5.08□□□□□ -1.6
LIM2P55344 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AL078621.3-201ENST00000623707 2042 ntBASIC5.08□□□□□ -1.6
LIM2P55344 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 AC137056.2-201ENST00000624055 1958 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC5.08□□□□□ -1.6
LIM2P55344 RN7SKP269-201ENST00000365545 319 ntBASIC5.08□□□□□ -1.6
LIM2P55344 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
LIM2P55344 OR4K12P-201ENST00000406538 961 ntBASIC5.08□□□□□ -1.6
LIM2P55344 RNA5SP487-201ENST00000410186 122 ntBASIC5.08□□□□□ -1.6
LIM2P55344 RN7SKP59-201ENST00000410520 314 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AL390774.1-201ENST00000411924 246 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 AL133325.1-201ENST00000421090 382 ntBASIC5.08□□□□□ -1.6
LIM2P55344 UBE2V2P1-201ENST00000434717 398 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC5.08□□□□□ -1.6
LIM2P55344 CBX1P2-201ENST00000453841 458 ntBASIC5.08□□□□□ -1.6
LIM2P55344 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.08□□□□□ -1.6
LIM2P55344 AL133445.1-201ENST00000467051 452 ntBASIC5.08□□□□□ -1.6
LIM2P55344 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 EIF3LP3-201ENST00000495197 822 ntBASIC5.08□□□□□ -1.6
LIM2P55344 IGBP1P4-201ENST00000503202 879 ntBASIC5.08□□□□□ -1.6
LIM2P55344 RPEP1-201ENST00000504507 658 ntBASIC5.08□□□□□ -1.6
LIM2P55344 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.08□□□□□ -1.6
LIM2P55344 RPL7L1P4-201ENST00000513004 707 ntBASIC5.08□□□□□ -1.6
LIM2P55344 HMGN1P9-201ENST00000515212 298 ntBASIC5.08□□□□□ -1.6
LIM2P55344 RN7SKP5-201ENST00000517045 272 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AC092709.1-201ENST00000521355 1045 ntBASIC5.08□□□□□ -1.6
LIM2P55344 OR5D2P-201ENST00000524390 911 ntBASIC5.08□□□□□ -1.6
LIM2P55344 HMGB1P40-201ENST00000525121 540 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.08□□□□□ -1.6
LIM2P55344 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC5.08□□□□□ -1.6
LIM2P55344 PSMA4-209ENST00000559082 1094 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 AC019322.1-201ENST00000571869 389 ntBASIC5.08□□□□□ -1.6
LIM2P55344 RN7SL290P-201ENST00000578661 300 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AL356608.1-201ENST00000610034 820 ntBASIC5.08□□□□□ -1.6
LIM2P55344 MIR6768-201ENST00000610734 72 ntBASIC5.08□□□□□ -1.6
LIM2P55344 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 AC109583.2-201ENST00000617367 129 ntBASIC5.08□□□□□ -1.6
LIM2P55344 WBP1LP8-201ENST00000617401 327 ntBASIC5.08□□□□□ -1.6
LIM2P55344 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 LINC02342-201ENST00000627910 461 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
LIM2P55344 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC5.08□□□□□ -1.6
LIM2P55344 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
LIM2P55344 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.08□□□□□ -1.6
LIM2P55344 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.08□□□□□ -1.6
LIM2P55344 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
LIM2P55344 Z83820.1-201ENST00000456978 1499 ntBASIC5.07□□□□□ -1.6
LIM2P55344 AC099811.1-201ENST00000597755 1496 ntTSL 3 BASIC5.07□□□□□ -1.6
LIM2P55344 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.07□□□□□ -1.6
LIM2P55344 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.07□□□□□ -1.6
LIM2P55344 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC5.07□□□□□ -1.6
LIM2P55344 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 RNA5SP187-201ENST00000384400 119 ntBASIC5.07□□□□□ -1.6
LIM2P55344 RNA5SP339-201ENST00000390987 122 ntBASIC5.07□□□□□ -1.6
LIM2P55344 RNA5SP241-201ENST00000391326 114 ntBASIC5.07□□□□□ -1.6
LIM2P55344 EFCAB9-201ENST00000398186 702 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
LIM2P55344 NPM1P37-201ENST00000403105 874 ntBASIC5.07□□□□□ -1.6
LIM2P55344 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 AC079355.1-201ENST00000421770 223 ntBASIC5.07□□□□□ -1.6
LIM2P55344 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.07□□□□□ -1.6
LIM2P55344 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
LIM2P55344 DEFB109A-201ENST00000482450 265 ntBASIC5.07□□□□□ -1.6
LIM2P55344 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.07□□□□□ -1.6
LIM2P55344 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.07□□□□□ -1.6
LIM2P55344 AC124854.1-201ENST00000512210 511 ntTSL 3 BASIC5.07□□□□□ -1.6
LIM2P55344 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.07□□□□□ -1.6
LIM2P55344 BX510359.5-201ENST00000515651 304 ntBASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms