Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 PEX5L-AS2-201ENST00000462801 630 ntTSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 AC023194.2-201ENST00000465398 406 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AC108729.2-201ENST00000476543 840 ntBASIC4.8□□□□□ -1.64
CDX1P47902 RPL5P22-201ENST00000480199 884 ntBASIC4.8□□□□□ -1.64
CDX1P47902 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 MTND3P24-201ENST00000506306 329 ntBASIC4.8□□□□□ -1.64
CDX1P47902 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC4.8□□□□□ -1.64
CDX1P47902 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 AC103833.1-201ENST00000517442 172 ntBASIC4.8□□□□□ -1.64
CDX1P47902 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 NPM1P35-201ENST00000533043 868 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 NPIPB1P-201ENST00000547442 1129 ntTSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 AC022523.1-201ENST00000560360 364 ntTSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 AC092123.1-202ENST00000565310 405 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 AC009962.1-201ENST00000567327 3813 ntBASIC4.8□□□□□ -1.64
CDX1P47902 PWRN1-208ENST00000567647 561 ntTSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC4.8□□□□□ -1.64
CDX1P47902 AP005120.1-202ENST00000584321 506 ntTSL 4 BASIC4.8□□□□□ -1.64
CDX1P47902 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 AC243960.3-202ENST00000599770 594 ntTSL 4 BASIC4.8□□□□□ -1.64
CDX1P47902 AC135178.6-201ENST00000605314 398 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AC012557.1-201ENST00000607115 611 ntBASIC4.8□□□□□ -1.64
CDX1P47902 AL591167.1-201ENST00000607321 456 ntBASIC4.8□□□□□ -1.64
CDX1P47902 ZNF630-AS1-201ENST00000614448 397 ntTSL 3 BASIC4.8□□□□□ -1.64
CDX1P47902 AL645927.2-201ENST00000618350 349 ntBASIC4.8□□□□□ -1.64
CDX1P47902 LINC01206-233ENST00000630063 878 ntTSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 LYARP1-201ENST00000436977 1501 ntBASIC4.8□□□□□ -1.64
CDX1P47902 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
CDX1P47902 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
CDX1P47902 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
CDX1P47902 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 AC007382.1-201ENST00000624376 2618 ntBASIC4.79□□□□□ -1.64
CDX1P47902 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 FAM135A-202ENST00000361499 5042 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 SCN11A-202ENST00000444237 5729 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 RNU6-666P-201ENST00000363499 107 ntBASIC4.79□□□□□ -1.64
CDX1P47902 RNU6-244P-201ENST00000391028 104 ntBASIC4.79□□□□□ -1.64
CDX1P47902 ATP5HP3-201ENST00000396994 486 ntBASIC4.79□□□□□ -1.64
CDX1P47902 CHMP1B2P-201ENST00000399581 597 ntBASIC4.79□□□□□ -1.64
CDX1P47902 RPA3-204ENST00000406109 434 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 MIR1282-201ENST00000408865 101 ntBASIC4.79□□□□□ -1.64
CDX1P47902 RN7SKP279-201ENST00000411383 298 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC002524.1-201ENST00000411687 547 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.79□□□□□ -1.64
CDX1P47902 C7orf69-201ENST00000418326 675 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 RPL35AP31-201ENST00000418340 337 ntBASIC4.79□□□□□ -1.64
CDX1P47902 OR6C64P-201ENST00000419708 825 ntBASIC4.79□□□□□ -1.64
CDX1P47902 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 AC115283.1-201ENST00000427353 400 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
CDX1P47902 MTND2P2-201ENST00000434633 945 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AFF2-IT1-201ENST00000435346 443 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 ATP6V1E1P1-201ENST00000439215 681 ntBASIC4.79□□□□□ -1.64
CDX1P47902 TCEA1P3-201ENST00000443005 880 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AL357052.1-201ENST00000443504 381 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 AL049649.1-201ENST00000444792 1105 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 GAPDHP23-201ENST00000444823 993 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 AC013476.1-201ENST00000446709 537 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 AL035551.1-201ENST00000446931 348 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.79□□□□□ -1.64
CDX1P47902 RPS27AP3-201ENST00000453803 454 ntBASIC4.79□□□□□ -1.64
CDX1P47902 MTND2P6-201ENST00000455337 1030 ntBASIC4.79□□□□□ -1.64
CDX1P47902 CYCSP53-201ENST00000455540 265 ntBASIC4.79□□□□□ -1.64
CDX1P47902 RPL36A-206ENST00000471855 399 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 AC098847.1-201ENST00000473094 348 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC092865.4-201ENST00000477936 615 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 AC073610.1-201ENST00000489971 396 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC4.79□□□□□ -1.64
CDX1P47902 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 CR383658.1-201ENST00000514609 734 ntBASIC4.79□□□□□ -1.64
CDX1P47902 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 RNA5SP434-201ENST00000516647 121 ntBASIC4.79□□□□□ -1.64
CDX1P47902 RN7SKP35-201ENST00000517210 151 ntBASIC4.79□□□□□ -1.64
CDX1P47902 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC4.79□□□□□ -1.64
CDX1P47902 FAU-203ENST00000525297 355 ntTSL 5 BASIC4.79□□□□□ -1.64
CDX1P47902 AP003396.4-201ENST00000527574 265 ntBASIC4.79□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 87.7 ms