Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
COL18A1P39060 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL18A1P39060 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC6.76□□□□□ -1.33
COL18A1P39060 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
COL18A1P39060 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.76□□□□□ -1.33
COL18A1P39060 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC6.76□□□□□ -1.33
COL18A1P39060 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
COL18A1P39060 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 AC104964.3-201ENST00000606115 2860 ntBASIC6.76□□□□□ -1.33
COL18A1P39060 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 DNAJC19P7-201ENST00000428811 344 ntBASIC6.76□□□□□ -1.33
COL18A1P39060 AURKAPS2-201ENST00000454983 333 ntBASIC6.76□□□□□ -1.33
COL18A1P39060 RPL12P20-201ENST00000475538 479 ntBASIC6.76□□□□□ -1.33
COL18A1P39060 AC011005.3-201ENST00000491624 395 ntBASIC6.76□□□□□ -1.33
COL18A1P39060 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 AL138828.1-201ENST00000626414 291 ntTSL 5 BASIC6.76□□□□□ -1.33
COL18A1P39060 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 IGSF6-201ENST00000268389 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC6.76□□□□□ -1.33
COL18A1P39060 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC6.76□□□□□ -1.33
COL18A1P39060 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.76□□□□□ -1.33
COL18A1P39060 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL18A1P39060 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.75□□□□□ -1.33
COL18A1P39060 ZNF652P1-201ENST00000442420 1309 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.75□□□□□ -1.33
COL18A1P39060 SNX13-213ENST00000611725 6817 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL18A1P39060 SNORA62-201ENST00000365493 153 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 RPS16P5-201ENST00000406501 404 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 ELOCP19-201ENST00000411919 318 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.75□□□□□ -1.33
COL18A1P39060 CYCSP11-201ENST00000436426 315 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC6.75□□□□□ -1.33
COL18A1P39060 AC000111.2-201ENST00000448200 210 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL18A1P39060 RPL23AP56-201ENST00000460778 453 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 AP001880.2-201ENST00000538233 448 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 SDHAF2-208ENST00000543265 438 ntTSL 5 BASIC6.75□□□□□ -1.33
COL18A1P39060 AP001357.1-201ENST00000586304 1053 ntBASIC6.75□□□□□ -1.33
COL18A1P39060 OGT-201ENST00000373701 3310 ntAPPRIS ALT1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL18A1P39060 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC6.75□□□□□ -1.33
COL18A1P39060 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC6.75□□□□□ -1.33
COL18A1P39060 MELK-210ENST00000543751 2400 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL18A1P39060 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC6.75□□□□□ -1.33
COL18A1P39060 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL18A1P39060 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC6.75□□□□□ -1.33
COL18A1P39060 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC6.75□□□□□ -1.33
COL18A1P39060 PIGN-220ENST00000638167 4195 ntTSL 5 BASIC6.75□□□□□ -1.33
COL18A1P39060 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.75□□□□□ -1.33
COL18A1P39060 U3.30-201ENST00000391308 210 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AL049693.1-201ENST00000402760 611 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AL049697.2-201ENST00000403708 294 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC068287.1-201ENST00000430283 295 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC6.74□□□□□ -1.33
COL18A1P39060 RPL7AP61-201ENST00000443410 636 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC6.74□□□□□ -1.33
COL18A1P39060 RPS24P16-201ENST00000497294 392 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC6.74□□□□□ -1.33
COL18A1P39060 OR5M2P-201ENST00000529003 936 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 BNIP3P35-201ENST00000604530 490 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 GCNT3-201ENST00000396065 4933 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 RBMS1-202ENST00000392753 3781 ntTSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC6.74□□□□□ -1.33
COL18A1P39060 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 Z98755.1-201ENST00000407015 1384 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.74□□□□□ -1.33
COL18A1P39060 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.74□□□□□ -1.33
COL18A1P39060 DDX6-208ENST00000620157 6152 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 NAA25-201ENST00000261745 6010 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
COL18A1P39060 AL590240.1-201ENST00000334118 313 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 RN7SKP185-201ENST00000362813 326 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 SNORA70F-201ENST00000384142 135 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC068535.1-201ENST00000416008 471 ntTSL 3 BASIC6.74□□□□□ -1.33
COL18A1P39060 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.74□□□□□ -1.33
COL18A1P39060 OR5M12P-201ENST00000423388 929 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 RSL24D1P6-201ENST00000426934 401 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 RPS29P9-201ENST00000440360 171 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC012512.1-201ENST00000446594 718 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC010733.1-201ENST00000451515 401 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 RPS17P2-201ENST00000461663 408 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC020779.1-201ENST00000478757 796 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 AC136624.4-201ENST00000573044 370 ntBASIC6.74□□□□□ -1.33
COL18A1P39060 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC6.74□□□□□ -1.33
COL18A1P39060 ZNF83-204ENST00000545872 2633 ntAPPRIS P1 TSL 2 BASIC6.74□□□□□ -1.33
COL18A1P39060 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 PROX1-AS1-202ENST00000433082 5266 ntTSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 DTWD2-201ENST00000304058 4365 ntTSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC6.74□□□□□ -1.33
COL18A1P39060 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC6.74□□□□□ -1.33
COL18A1P39060 AC079298.1-201ENST00000625026 1619 ntBASIC6.73□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms