Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC113412.1-201ENST00000425840 504 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC092651.1-201ENST00000426110 312 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AL512637.2-201ENST00000431287 1256 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC106053.1-201ENST00000431697 368 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AL157387.1-201ENST00000436077 335 ntTSL 2 BASIC6.62□□□□□ -1.35
SMARCA1P28370 BX679664.2-201ENST00000439282 283 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC064862.4-201ENST00000442180 334 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 LINC01880-201ENST00000446593 561 ntTSL 4 BASIC6.62□□□□□ -1.35
SMARCA1P28370 HMGN1P36-201ENST00000446623 298 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AL161722.1-201ENST00000446972 1032 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC011196.1-201ENST00000451816 595 ntTSL 2 BASIC6.62□□□□□ -1.35
SMARCA1P28370 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC6.62□□□□□ -1.35
SMARCA1P28370 OR7E157P-201ENST00000494376 911 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC103833.1-201ENST00000517442 172 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC6.62□□□□□ -1.35
SMARCA1P28370 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC025917.1-201ENST00000562062 612 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC6.62□□□□□ -1.35
SMARCA1P28370 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 AC004775.1-201ENST00000607389 753 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC005156.1-201ENST00000613371 573 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AC090607.5-201ENST00000615692 224 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 AL035661.1-201ENST00000620459 1144 ntBASIC6.62□□□□□ -1.35
SMARCA1P28370 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SMARCA1P28370 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SMARCA1P28370 ZNF521-201ENST00000361524 4871 ntAPPRIS P1 TSL 1 (best) BASIC6.62□□□□□ -1.35
SMARCA1P28370 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC6.62□□□□□ -1.35
SMARCA1P28370 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.62□□□□□ -1.35
SMARCA1P28370 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.62□□□□□ -1.35
SMARCA1P28370 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC6.62□□□□□ -1.35
SMARCA1P28370 CASC19-261ENST00000641853 1638 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.61□□□□□ -1.35
SMARCA1P28370 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC6.61□□□□□ -1.35
SMARCA1P28370 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.61□□□□□ -1.35
SMARCA1P28370 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.61□□□□□ -1.35
SMARCA1P28370 KIAA1109-201ENST00000264501 15896 ntAPPRIS P1 TSL 5 BASIC6.61□□□□□ -1.35
SMARCA1P28370 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.61□□□□□ -1.35
SMARCA1P28370 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC6.61□□□□□ -1.35
SMARCA1P28370 OR52N4-201ENST00000317254 1037 ntAPPRIS P1 BASIC6.61□□□□□ -1.35
SMARCA1P28370 RNU6-792P-201ENST00000363490 107 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC6.61□□□□□ -1.35
SMARCA1P28370 RNU1-136P-201ENST00000384181 164 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 RN7SKP293-201ENST00000411389 296 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC092570.3-201ENST00000420113 693 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC002504.1-201ENST00000438281 691 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AC087672.1-201ENST00000479876 766 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AC118282.1-201ENST00000506408 765 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AC093730.1-201ENST00000508825 448 ntTSL 3 BASIC6.61□□□□□ -1.35
SMARCA1P28370 MTATP6P1-201ENST00000514057 681 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 SNORA43.3-201ENST00000517240 103 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 IGKV2-19-201ENST00000518132 283 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC104248.1-202ENST00000524134 486 ntTSL 5 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AP001372.4-201ENST00000524889 472 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AL121594.4-201ENST00000556211 1196 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC008521.2-201ENST00000591021 259 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AP001267.4-201ENST00000602598 545 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 RNA5SP440-201ENST00000612665 119 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC6.61□□□□□ -1.35
SMARCA1P28370 AC026124.2-201ENST00000621847 656 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AC103703.1-201ENST00000634783 663 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 AC006927.4-201ENST00000639187 543 ntBASIC6.61□□□□□ -1.35
SMARCA1P28370 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
SMARCA1P28370 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC6.61□□□□□ -1.35
SMARCA1P28370 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
SMARCA1P28370 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC6.61□□□□□ -1.35
SMARCA1P28370 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
SMARCA1P28370 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC6.6□□□□□ -1.35
SMARCA1P28370 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 67.8 ms