Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC8.15□□□□□ -1.1
COL9A1P20849 AL713965.1-201ENST00000421166 230 ntTSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 BRWD1P3-201ENST00000428816 390 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AL157402.1-201ENST00000429469 363 ntTSL 3 BASIC8.15□□□□□ -1.1
COL9A1P20849 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC8.15□□□□□ -1.1
COL9A1P20849 LINC01185-201ENST00000439412 554 ntTSL 4 BASIC8.15□□□□□ -1.1
COL9A1P20849 AQP4-203ENST00000440832 1169 ntTSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 TXNP1-201ENST00000441872 371 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 FANK1-AS1-201ENST00000445458 428 ntTSL 3 BASIC8.15□□□□□ -1.1
COL9A1P20849 RNU7-63P-201ENST00000459054 62 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC104687.1-201ENST00000485829 412 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC100773.1-201ENST00000505409 520 ntTSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 AC098591.2-201ENST00000510152 315 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 RNU6-150P-201ENST00000516237 95 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC8.15□□□□□ -1.1
COL9A1P20849 AC114684.1-201ENST00000587659 352 ntTSL 3 BASIC8.15□□□□□ -1.1
COL9A1P20849 AC024603.1-201ENST00000597938 592 ntTSL 4 BASIC8.15□□□□□ -1.1
COL9A1P20849 AC011468.4-201ENST00000603942 409 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC005070.2-201ENST00000604391 260 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC100812.1-201ENST00000607622 580 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AL354950.2-201ENST00000617939 290 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 AC005899.7-201ENST00000618199 588 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 MARCH6-215ENST00000640713 231 ntTSL 5 BASIC8.15□□□□□ -1.1
COL9A1P20849 MIR193BHG-214ENST00000641765 509 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 SPARC-201ENST00000231061 3701 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 LHX9-203ENST00000367390 7413 ntAPPRIS ALT1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 AL133279.3-201ENST00000563140 2352 ntBASIC8.15□□□□□ -1.1
COL9A1P20849 OPTN-202ENST00000378747 3400 ntAPPRIS P2 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 GPR155-203ENST00000392552 6730 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.1
COL9A1P20849 DET1-202ENST00000444300 2154 ntTSL 5 BASIC8.15□□□□□ -1.11
COL9A1P20849 SPDYE9P-202ENST00000571071 2024 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
COL9A1P20849 SPDYE11-203ENST00000573748 2024 ntTSL 1 (best) BASIC8.15□□□□□ -1.11
COL9A1P20849 C4orf26-201ENST00000311623 1874 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL9A1P20849 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL9A1P20849 RAPH1-204ENST00000418114 1794 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.11
COL9A1P20849 RAPH1-205ENST00000419464 1779 ntAPPRIS ALT2 TSL 5 BASIC8.15□□□□□ -1.11
COL9A1P20849 DRP2-203ENST00000402866 7018 ntAPPRIS P3 TSL 5 BASIC8.15□□□□□ -1.11
COL9A1P20849 FCRL4-201ENST00000271532 3459 ntAPPRIS P1 TSL 1 (best) BASIC8.15□□□□□ -1.11
COL9A1P20849 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 C9orf131-205ENST00000421362 3259 ntAPPRIS ALT2 TSL 4 BASIC8.14□□□□□ -1.11
COL9A1P20849 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 CAPN3-206ENST00000397163 3228 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 C9orf131-202ENST00000354479 3184 ntAPPRIS ALT2 TSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 NR2F1-AS1-208ENST00000606233 2264 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 AL049833.3-201ENST00000623920 3738 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 CDH17-202ENST00000441892 2204 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 EPB41-206ENST00000373798 5933 ntAPPRIS P1 TSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 AC006213.1-202ENST00000589021 2176 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 TANC2-201ENST00000389520 6404 ntTSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 PWRN1-211ENST00000568609 1443 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 SYNE1-211ENST00000413186 4860 ntTSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 ACVR2A-207ENST00000535787 5166 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 NASP-201ENST00000350030 3207 ntAPPRIS P4 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 CFAP61-210ENST00000451767 1946 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 DPH5-201ENST00000342173 1143 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 RNU5E-8P-201ENST00000363502 116 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 Y_RNA.255-201ENST00000364581 97 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 Y_RNA.552-201ENST00000384665 112 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 MIR506-201ENST00000384998 124 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 RNU4-14P-201ENST00000410858 122 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AC114814.2-201ENST00000419195 485 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 SLC35E1P1-201ENST00000419313 864 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AC008496.2-201ENST00000421252 460 ntTSL 3 BASIC8.14□□□□□ -1.11
COL9A1P20849 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 OR13K1P-201ENST00000444577 975 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AC073415.1-201ENST00000449240 153 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 RPL31P11-202ENST00000454082 372 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AL133351.1-201ENST00000456189 417 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 AC100843.1-201ENST00000475372 550 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 CFLAR-223ENST00000479953 1230 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 TM4SF1-AS1-201ENST00000484046 488 ntTSL 3 BASIC8.14□□□□□ -1.11
COL9A1P20849 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 RNU6-976P-201ENST00000516086 111 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 IGHVII-78-1-201ENST00000521105 269 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC8.14□□□□□ -1.11
COL9A1P20849 AP003072.2-201ENST00000527756 676 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AP000676.2-201ENST00000529711 301 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AP002370.2-202ENST00000533669 908 ntTSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 APOOP3-201ENST00000536787 586 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 AC079363.1-201ENST00000551366 1125 ntBASIC8.14□□□□□ -1.11
COL9A1P20849 LINC00640-201ENST00000554409 498 ntTSL 3 BASIC8.14□□□□□ -1.11
COL9A1P20849 CRTC3-AS1-201ENST00000558105 502 ntTSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC8.14□□□□□ -1.11
COL9A1P20849 AC090771.2-201ENST00000588794 571 ntTSL 3 BASIC8.14□□□□□ -1.11
COL9A1P20849 AC138035.1-203ENST00000604354 1066 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 UQCRC2-213ENST00000630839 535 ntTSL 4 BASIC8.14□□□□□ -1.11
COL9A1P20849 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC8.14□□□□□ -1.11
COL9A1P20849 DOCK1-206ENST00000623213 5761 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 LINC02292-201ENST00000554522 1701 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 TMEM269-204ENST00000637012 3354 ntAPPRIS ALT2 TSL 5 BASIC8.14□□□□□ -1.11
COL9A1P20849 LPIN1-207ENST00000425416 5582 ntTSL 2 BASIC8.14□□□□□ -1.11
COL9A1P20849 RGS4-204ENST00000421743 3311 ntTSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC8.14□□□□□ -1.11
COL9A1P20849 PRCP-202ENST00000393399 2120 ntTSL 2 BASIC8.14□□□□□ -1.11
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms