Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.52□□□□□ -1.53
MSH3P20585 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.52□□□□□ -1.53
MSH3P20585 VDAC2P4-201ENST00000452925 711 ntBASIC5.52□□□□□ -1.53
MSH3P20585 PSAT1P4-201ENST00000466500 526 ntBASIC5.52□□□□□ -1.53
MSH3P20585 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.52□□□□□ -1.53
MSH3P20585 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 RN7SL273P-201ENST00000481561 299 ntBASIC5.52□□□□□ -1.53
MSH3P20585 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC5.52□□□□□ -1.53
MSH3P20585 AC105420.1-201ENST00000504389 582 ntBASIC5.52□□□□□ -1.53
MSH3P20585 AC074087.1-201ENST00000512059 724 ntBASIC5.52□□□□□ -1.53
MSH3P20585 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.52□□□□□ -1.53
MSH3P20585 SNORA70.11-201ENST00000515987 138 ntBASIC5.52□□□□□ -1.53
MSH3P20585 SNORA70.13-201ENST00000516116 138 ntBASIC5.52□□□□□ -1.53
MSH3P20585 NRBF2P4-201ENST00000520874 850 ntBASIC5.52□□□□□ -1.53
MSH3P20585 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.52□□□□□ -1.53
MSH3P20585 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.52□□□□□ -1.53
MSH3P20585 AC130364.2-201ENST00000528639 604 ntBASIC5.52□□□□□ -1.53
MSH3P20585 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.52□□□□□ -1.53
MSH3P20585 AC103808.4-201ENST00000577258 391 ntTSL 3 BASIC5.52□□□□□ -1.53
MSH3P20585 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.52□□□□□ -1.53
MSH3P20585 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
MSH3P20585 KATNBL1P1-201ENST00000605192 748 ntBASIC5.52□□□□□ -1.53
MSH3P20585 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC5.52□□□□□ -1.53
MSH3P20585 RNA5SP440-201ENST00000612665 119 ntBASIC5.52□□□□□ -1.53
MSH3P20585 AC025574.2-201ENST00000615621 514 ntBASIC5.52□□□□□ -1.53
MSH3P20585 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC5.52□□□□□ -1.53
MSH3P20585 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.52□□□□□ -1.53
MSH3P20585 AL139254.3-201ENST00000641097 674 ntBASIC5.52□□□□□ -1.53
MSH3P20585 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.52□□□□□ -1.53
MSH3P20585 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.52□□□□□ -1.53
MSH3P20585 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 AC068870.1-201ENST00000563737 2455 ntBASIC5.52□□□□□ -1.53
MSH3P20585 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.52□□□□□ -1.53
MSH3P20585 LINC01963-201ENST00000562038 3148 ntBASIC5.52□□□□□ -1.53
MSH3P20585 STON1-201ENST00000404752 5511 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
MSH3P20585 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
MSH3P20585 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.51□□□□□ -1.53
MSH3P20585 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 RN7SKP6-201ENST00000364795 319 ntBASIC5.51□□□□□ -1.53
MSH3P20585 RN7SKP81-201ENST00000365603 331 ntBASIC5.51□□□□□ -1.53
MSH3P20585 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 OR2B3-201ENST00000377173 1106 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
MSH3P20585 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.51□□□□□ -1.53
MSH3P20585 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 AL035706.1-201ENST00000439186 683 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 MED28P3-201ENST00000444288 531 ntBASIC5.51□□□□□ -1.53
MSH3P20585 AC073909.1-201ENST00000447112 999 ntBASIC5.51□□□□□ -1.53
MSH3P20585 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.51□□□□□ -1.53
MSH3P20585 AL450023.1-201ENST00000450868 751 ntBASIC5.51□□□□□ -1.53
MSH3P20585 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 RPS27AP2-201ENST00000457576 465 ntBASIC5.51□□□□□ -1.53
MSH3P20585 SEPT7P6-201ENST00000469999 1143 ntBASIC5.51□□□□□ -1.53
MSH3P20585 RN7SL717P-201ENST00000478343 297 ntBASIC5.51□□□□□ -1.53
MSH3P20585 RABGAP1L-214ENST00000478442 648 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.51□□□□□ -1.53
MSH3P20585 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 RN7SKP253-201ENST00000516424 309 ntBASIC5.51□□□□□ -1.53
MSH3P20585 RN7SKP99-201ENST00000517028 307 ntBASIC5.51□□□□□ -1.53
MSH3P20585 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 OR4A17P-201ENST00000526032 904 ntBASIC5.51□□□□□ -1.53
MSH3P20585 AC122688.1-201ENST00000541494 223 ntBASIC5.51□□□□□ -1.53
MSH3P20585 AL049874.4-201ENST00000557593 255 ntBASIC5.51□□□□□ -1.53
MSH3P20585 LINC00933-205ENST00000560917 449 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.51□□□□□ -1.53
MSH3P20585 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 MIR6133-201ENST00000617057 108 ntBASIC5.51□□□□□ -1.53
MSH3P20585 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
MSH3P20585 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.51□□□□□ -1.53
MSH3P20585 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
MSH3P20585 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.51□□□□□ -1.53
MSH3P20585 AC104964.3-201ENST00000606115 2860 ntBASIC5.5□□□□□ -1.53
MSH3P20585 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
MSH3P20585 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
MSH3P20585 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.5□□□□□ -1.53
MSH3P20585 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 79.5 ms