Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 AC130364.2-201ENST00000528639 604 ntBASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AL049779.2-201ENST00000553847 315 ntBASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AL512329.2-201ENST00000607350 548 ntBASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AC010632.3-201ENST00000611377 369 ntBASIC5.43□□□□□ -1.54
LHX3Q9UBR4 CYP4F35P-202ENST00000636121 390 ntBASIC5.43□□□□□ -1.54
LHX3Q9UBR4 RGSL1-201ENST00000294854 3696 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 PABPC1P6-201ENST00000445594 1829 ntBASIC5.43□□□□□ -1.54
LHX3Q9UBR4 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
LHX3Q9UBR4 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 RNA5SP453-201ENST00000362503 119 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 SNORA70.6-201ENST00000383934 134 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 CBX1P3-201ENST00000413296 527 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC009784.1-201ENST00000426484 460 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 BX119904.3-201ENST00000428194 957 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 FAM96AP1-201ENST00000430879 482 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 MED28P3-201ENST00000444288 531 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AL606490.1-201ENST00000452266 765 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 TAAR4P-201ENST00000454843 1039 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 RN7SL177P-201ENST00000476596 299 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 RN7SL423P-201ENST00000486202 304 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC015864.1-201ENST00000496512 544 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AP003080.1-202ENST00000526526 915 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 MIR1269B-201ENST00000580405 75 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 SUMO2P15-201ENST00000604285 278 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC007786.3-201ENST00000615154 596 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC008115.4-201ENST00000619780 775 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC241377.1-201ENST00000619797 406 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AP003400.3-201ENST00000624904 346 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC004808.2-201ENST00000627965 773 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AC099654.6-201ENST00000636487 512 ntBASIC5.42□□□□□ -1.54
LHX3Q9UBR4 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.42□□□□□ -1.54
LHX3Q9UBR4 CR788268.1-201ENST00000603931 1809 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AL592429.1-201ENST00000403909 1473 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC005294.1-201ENST00000355509 281 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 RNU1-146P-201ENST00000364015 165 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AL162400.1-201ENST00000418091 359 ntTSL 5 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 SLC35E1P1-201ENST00000419313 864 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 OXSM-202ENST00000420173 1256 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 OR52B5P-201ENST00000435337 951 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC245047.2-201ENST00000441060 530 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 FLJ27354-202ENST00000443562 770 ntTSL 3 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 RPL7P39-201ENST00000481157 744 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 RN7SL629P-201ENST00000489622 285 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 IGBP1P4-201ENST00000503202 879 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 HMGN1P9-201ENST00000515212 298 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 SNORA81.2-201ENST00000516868 170 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC084033.1-201ENST00000550830 633 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.41□□□□□ -1.54
LHX3Q9UBR4 AC127381.1-201ENST00000555979 939 ntBASIC5.41□□□□□ -1.54
LHX3Q9UBR4 NPM1P5-201ENST00000557228 838 ntBASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 75.6 ms