Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 COX6C-205ENST00000520468 1098 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 IGHVIII-11-1-201ENST00000522733 267 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AP001000.1-201ENST00000526843 742 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 OR1E3-201ENST00000575608 948 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 APOC2-205ENST00000592257 444 ntTSL 3 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC124916.2-201ENST00000604416 224 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC244107.2-201ENST00000611773 76 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 TMEM30CP-203ENST00000637814 1035 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 CDY11P-201ENST00000447168 1651 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 AC079298.1-201ENST00000625026 1619 ntBASIC5.3□□□□□ -1.56
CCDC28BQ9BUN5 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC090616.2-201ENST00000358484 431 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 SNORA64.1-201ENST00000362600 132 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 RNU1-19P-201ENST00000363306 165 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 OR2AH1P-201ENST00000425717 928 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 PPIAP27-201ENST00000453800 265 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 CST12P-201ENST00000457644 362 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC009963.3-201ENST00000458090 486 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC091874.2-201ENST00000505889 720 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 RN7SKP46-201ENST00000515942 234 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 RNU2-45P-201ENST00000516068 187 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC008676.3-201ENST00000521237 435 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 OR8G3P-201ENST00000533406 921 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC145285.4-201ENST00000568183 540 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 MIR6721-201ENST00000617181 87 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 AC138627.1-204ENST00000641894 765 ntBASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.29□□□□□ -1.56
CCDC28BQ9BUN5 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AP001273.1-201ENST00000624493 3152 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 FAP-203ENST00000443424 2598 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC240504.1-201ENST00000395709 845 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 IL6-203ENST00000401651 539 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 SNORA81-201ENST00000408493 178 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 FAM183DP-201ENST00000421987 399 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC068491.1-201ENST00000449539 1241 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC022215.1-201ENST00000481770 362 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 RPL15P21-201ENST00000495592 567 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 RNA5SP340-201ENST00000517132 107 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC083923.2-203ENST00000520512 372 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC022360.1-201ENST00000521058 340 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AP000648.1-201ENST00000529682 397 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC084121.1-201ENST00000533882 835 ntBASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AC078864.1-201ENST00000547538 512 ntTSL 4 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 AL355075.2-201ENST00000555435 478 ntTSL 2 BASIC5.28□□□□□ -1.56
CCDC28BQ9BUN5 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 115.3 ms