Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 AL513548.1-201ENST00000562904 1724 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 EXD1-201ENST00000314992 2942 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 MFSD8-239ENST00000641590 2479 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 MIR130A-201ENST00000385274 89 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 GABARAPL3-201ENST00000412799 354 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 NPM1P22-201ENST00000427761 952 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 CYCSP6-201ENST00000434498 302 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 H3F3BP1-201ENST00000440551 403 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 RN7SL172P-201ENST00000460535 303 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC004815.1-201ENST00000484185 331 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 RN7SKP99-201ENST00000517028 307 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC069113.2-201ENST00000517735 359 ntTSL 3 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC126615.2-201ENST00000553003 515 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC067805.1-201ENST00000559344 470 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC012616.1-201ENST00000600294 197 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 PRRC1-201ENST00000296666 4699 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AL023755.1-201ENST00000441851 1801 ntTSL 2 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AL161912.4-201ENST00000623889 2468 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 AC073365.1-203ENST00000641055 1992 ntBASIC5.46□□□□□ -1.54
CCDC3Q9BQI4 TEK-205ENST00000615002 4666 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC012078.1-201ENST00000405035 1646 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC087516.1-201ENST00000561236 2428 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 TESPA1-203ENST00000524622 4188 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 ADAMTS9-AS2-201ENST00000460833 3691 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 RNU1-77P-201ENST00000390868 162 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 XIST-201ENST00000416330 750 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 SLC35E1P1-201ENST00000419313 864 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 RPL12P43-201ENST00000420608 499 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AL139148.1-201ENST00000427122 680 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 CNOT7P2-201ENST00000441051 832 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 RPL7P45-201ENST00000455851 743 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC005532.2-201ENST00000467154 373 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC008953.1-201ENST00000497334 318 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC002456.2-201ENST00000509356 380 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AL049779.2-201ENST00000553847 315 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC020915.5-201ENST00000596836 964 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AP001267.4-201ENST00000602598 545 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 NANOGP3-201ENST00000605855 286 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC004948.1-201ENST00000609858 672 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC117490.2-201ENST00000610042 594 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC241377.1-201ENST00000619797 406 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AC104820.1-201ENST00000624183 307 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 OFD1P8Y-201ENST00000449148 1433 ntBASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 AP004243.1-201ENST00000529108 1433 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 SYTL2-208ENST00000524452 2733 ntAPPRIS P3 TSL 2 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 PLEKHS1-205ENST00000369312 3443 ntTSL 2 BASIC5.45□□□□□ -1.54
CCDC3Q9BQI4 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC5.44□□□□□ -1.54
CCDC3Q9BQI4 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 74.9 ms