Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS39Q96JC1 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS39Q96JC1 NEPNP-201ENST00000404786 1371 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 TRIM51GP-201ENST00000534741 1350 ntBASIC5.55□□□□□ -1.52
VPS39Q96JC1 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 DBT-201ENST00000370131 1521 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AP000473.2-201ENST00000602659 1537 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 SLC9B1P1-201ENST00000331172 1337 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 IQCH-214ENST00000629425 1822 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 RPS3AP2-201ENST00000407190 754 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 LINC01980-201ENST00000414382 543 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC007161.1-204ENST00000423039 460 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC127526.2-201ENST00000426436 775 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 RPL12P18-201ENST00000437175 325 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AL512637.1-201ENST00000439523 1231 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 CYP3A5-203ENST00000439761 1075 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 TAAR4P-201ENST00000454843 1039 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 NPM1P28-201ENST00000492269 840 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 BLNK-209ENST00000495266 440 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC011411.1-201ENST00000509592 876 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC091912.1-201ENST00000511351 248 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 PDE4D-225ENST00000515835 590 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 HMGB1P42-201ENST00000532126 553 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC011270.1-201ENST00000558606 583 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC084759.1-201ENST00000561168 290 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC018558.1-201ENST00000562591 459 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 CD24P2-201ENST00000565486 219 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC092121.1-201ENST00000569452 202 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC015802.2-201ENST00000589690 189 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC010615.3-201ENST00000597319 394 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 CDC42EP3P1-201ENST00000601004 764 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC079315.1-201ENST00000602952 623 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC087565.3-203ENST00000641018 837 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 GABRG2-203ENST00000414552 3927 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 MRE11P1-201ENST00000464884 2127 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 AC010266.2-201ENST00000564741 3255 ntBASIC5.54□□□□□ -1.52
VPS39Q96JC1 PSG7-206ENST00000623675 1392 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS39Q96JC1 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 CFAP47-203ENST00000378653 9943 ntAPPRIS P2 TSL 5 BASIC5.54□□□□□ -1.52
VPS39Q96JC1 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
VPS39Q96JC1 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
VPS39Q96JC1 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 SNORA5.1-201ENST00000384275 131 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 SNORD56.6-201ENST00000384569 71 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 MT-RNR1-201ENST00000389680 954 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 AC233289.1-201ENST00000403700 508 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 RPL5P19-201ENST00000404228 893 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 ATP5A1P8-201ENST00000423669 1291 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 OR6C71P-201ENST00000432580 913 ntBASIC5.53□□□□□ -1.52
VPS39Q96JC1 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.53□□□□□ -1.52
VPS39Q96JC1 AL591363.1-201ENST00000450091 483 ntBASIC5.53□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 98.8 ms