Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
PTPN9P43378 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC5.87□□□□□ -1.47
PTPN9P43378 RN7SL284P-201ENST00000498823 275 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 PSMA2P2-201ENST00000504319 686 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.87□□□□□ -1.47
PTPN9P43378 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.87□□□□□ -1.47
PTPN9P43378 AC027338.1-201ENST00000514840 825 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.87□□□□□ -1.47
PTPN9P43378 SNORA70.11-201ENST00000515987 138 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 SNORD46.2-201ENST00000516021 102 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 SNORA70.13-201ENST00000516116 138 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 CYCSP22-201ENST00000517555 339 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC5.87□□□□□ -1.47
PTPN9P43378 AC122688.1-201ENST00000541494 223 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC5.87□□□□□ -1.47
PTPN9P43378 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC5.87□□□□□ -1.47
PTPN9P43378 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.87□□□□□ -1.47
PTPN9P43378 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.87□□□□□ -1.47
PTPN9P43378 MIMT1-201ENST00000597105 1050 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.87□□□□□ -1.47
PTPN9P43378 AC106858.1-201ENST00000637497 429 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 AD000090.1-201ENST00000638356 494 ntTSL 1 (best) BASIC5.87□□□□□ -1.47
PTPN9P43378 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.87□□□□□ -1.47
PTPN9P43378 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
PTPN9P43378 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
PTPN9P43378 AC114774.1-201ENST00000507410 1770 ntBASIC5.87□□□□□ -1.47
PTPN9P43378 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
PTPN9P43378 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC5.87□□□□□ -1.47
PTPN9P43378 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.87□□□□□ -1.47
PTPN9P43378 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
PTPN9P43378 OR2AT4-202ENST00000641504 8661 ntAPPRIS P1 BASIC5.87□□□□□ -1.47
PTPN9P43378 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.86□□□□□ -1.47
PTPN9P43378 SRRM1P3-201ENST00000426911 2678 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 AC027279.4-201ENST00000624371 2072 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 Z83820.1-201ENST00000456978 1499 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
PTPN9P43378 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 SNORD51.1-201ENST00000365405 77 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.86□□□□□ -1.47
PTPN9P43378 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 RNA5SP284-201ENST00000384547 118 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC5.86□□□□□ -1.47
PTPN9P43378 ST13P16-201ENST00000401760 781 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 MIR1282-201ENST00000408865 101 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 EEF1A1P29-201ENST00000416082 1096 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 RPL34P3-201ENST00000421454 338 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 IPPKP1-201ENST00000422501 768 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 AC073508.1-201ENST00000428866 656 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 KCTD9P1-201ENST00000430462 1167 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.86□□□□□ -1.47
PTPN9P43378 RPL23AP19-201ENST00000436229 369 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 SUMO2P3-201ENST00000438311 288 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 LINC02210-201ENST00000444561 288 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC5.86□□□□□ -1.47
PTPN9P43378 AC007998.1-201ENST00000474156 672 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 STRADBP1-201ENST00000478954 1281 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.86□□□□□ -1.47
PTPN9P43378 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 AK4P6-201ENST00000505168 528 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC5.86□□□□□ -1.47
PTPN9P43378 SNORA43.3-201ENST00000517240 103 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.86□□□□□ -1.47
PTPN9P43378 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 OR4V1P-201ENST00000525394 1140 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC5.86□□□□□ -1.47
PTPN9P43378 AC079907.2-202ENST00000547004 423 ntTSL 2 BASIC5.86□□□□□ -1.47
PTPN9P43378 AC003991.1-201ENST00000594469 484 ntTSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.86□□□□□ -1.47
PTPN9P43378 AC105148.1-201ENST00000604961 409 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 OR51C1P-201ENST00000608504 942 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 LINC01837-206ENST00000636649 1056 ntTSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 AC068870.3-201ENST00000625077 2536 ntBASIC5.86□□□□□ -1.47
PTPN9P43378 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.86□□□□□ -1.47
PTPN9P43378 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.86□□□□□ -1.47
PTPN9P43378 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
PTPN9P43378 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.85□□□□□ -1.47
PTPN9P43378 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
PTPN9P43378 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC5.85□□□□□ -1.47
PTPN9P43378 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 AC006206.1-201ENST00000544842 3387 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
PTPN9P43378 DDX6P1-205ENST00000441966 1436 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 117.2 ms