Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 LINC01831-201ENST00000449772 493 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 GNL2P1-201ENST00000451274 2190 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 SEPT7P3-201ENST00000455017 621 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AC011225.1-201ENST00000457751 369 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 RN7SL826P-201ENST00000479724 288 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AC116562.1-201ENST00000485355 781 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 OR9N1P-202ENST00000494289 481 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 PPM1AP1-201ENST00000502740 1135 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AC008427.1-201ENST00000503102 655 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 NDUFA5P12-201ENST00000503796 343 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC6.8□□□□□ -1.32
COL6A1P12109 RNU6-889P-201ENST00000517189 103 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 COX6C-209ENST00000523016 745 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 C1GALT1P1-201ENST00000548895 1089 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC012050.1-201ENST00000558185 472 ntTSL 3 BASIC6.8□□□□□ -1.32
COL6A1P12109 SLC25A3P1-203ENST00000563752 460 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC023825.1-201ENST00000566704 1030 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 PIGPP4-201ENST00000584447 307 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 ZNF571-205ENST00000590751 1700 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC021171.1-201ENST00000603137 706 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 MIR6748-201ENST00000610433 71 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC6.8□□□□□ -1.32
COL6A1P12109 AC009120.2-204ENST00000621548 2032 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AC105105.5-201ENST00000622635 1294 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 AC105114.1-201ENST00000624795 1862 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 BCORP1-202ENST00000441139 3461 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 USP32-214ENST00000592339 4045 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 MTCO1P7-201ENST00000419523 1542 ntBASIC6.8□□□□□ -1.32
COL6A1P12109 ESRRG-212ENST00000463665 3359 ntTSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 GCNA-201ENST00000373695 3213 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL6A1P12109 CC2D2B-202ENST00000410012 1792 ntAPPRIS ALT2 TSL 2 BASIC6.8□□□□□ -1.32
COL6A1P12109 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 LEPR-205ENST00000371060 5135 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 GPATCH2L-201ENST00000261530 14007 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.79□□□□□ -1.32
COL6A1P12109 L3MBTL3-201ENST00000361794 4217 ntAPPRIS P4 TSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
COL6A1P12109 NF1-202ENST00000358273 12425 ntAPPRIS ALT1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 RNA5SP514-201ENST00000363717 111 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 MIR137-201ENST00000385223 102 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 TRIM60P5Y-201ENST00000413946 574 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 TEX41-203ENST00000420472 765 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC241520.1-201ENST00000422654 1099 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC000095.2-201ENST00000424407 768 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 RNF19BPX-201ENST00000426224 625 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 AC127526.2-201ENST00000426436 775 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 MTND4P32-201ENST00000437189 1237 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 Z84478.1-201ENST00000438230 1219 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 VN1R40P-201ENST00000455196 941 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC093801.1-201ENST00000504017 307 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC112518.2-201ENST00000508565 425 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 PLAC8-205ENST00000509973 489 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 GAPDHP71-201ENST00000511530 1003 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC6.79□□□□□ -1.32
COL6A1P12109 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 SEC11B-201ENST00000518383 499 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 HAUS1P3-201ENST00000523909 662 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 REXO2-218ENST00000544827 880 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC006530.1-201ENST00000555980 571 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 MTCYBP23-201ENST00000558717 1102 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 AGGF1P6-201ENST00000569213 976 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 AP001094.1-201ENST00000579805 193 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 TVP23B-209ENST00000581733 1258 ntTSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC6.79□□□□□ -1.32
COL6A1P12109 AL606834.3-201ENST00000602615 496 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 ZNF329-203ENST00000597186 3930 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.79□□□□□ -1.32
COL6A1P12109 LRP2BP-202ENST00000505916 2302 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
COL6A1P12109 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 AL359195.2-201ENST00000623657 4412 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 CACNB4-245ENST00000637284 2423 ntTSL 5 BASIC6.79□□□□□ -1.32
COL6A1P12109 FO082842.1-201ENST00000423552 1370 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 SAMM50P1-201ENST00000455403 1399 ntBASIC6.79□□□□□ -1.32
COL6A1P12109 PDE1A-204ENST00000410103 2000 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL6A1P12109 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.79□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms