Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 CUL4AP1-201ENST00000514750 1863 ntBASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
TM9SF3Q9HD45 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 ANK3-201ENST00000280772 16874 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC004158.1-201ENST00000564508 4319 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 RNU6-729P-201ENST00000384399 107 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC106901.1-201ENST00000425086 698 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 LINC01350-201ENST00000436955 642 ntTSL 3 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AP000547.1-201ENST00000454360 617 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC073610.1-201ENST00000489971 396 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 HIGD1AP14-201ENST00000507617 282 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC011396.3-201ENST00000508845 512 ntTSL 3 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC023906.4-201ENST00000557898 895 ntTSL 3 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 LINC02563-201ENST00000579474 277 ntTSL 3 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AL512329.2-201ENST00000607350 548 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AL158062.1-201ENST00000619632 745 ntBASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.5
TM9SF3Q9HD45 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.65□□□□□ -1.51
TM9SF3Q9HD45 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TM9SF3Q9HD45 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.51
TM9SF3Q9HD45 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.65□□□□□ -1.51
TM9SF3Q9HD45 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.65□□□□□ -1.51
TM9SF3Q9HD45 CTAGE5-217ENST00000557038 2869 ntTSL 1 (best) BASIC5.65□□□□□ -1.51
TM9SF3Q9HD45 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 ZNF81-202ENST00000338637 7859 ntAPPRIS P1 TSL 3 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AP004607.3-201ENST00000530354 3915 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 RNA5SP30-201ENST00000365552 115 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AL158827.1-201ENST00000416300 391 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 NENFP1-201ENST00000419476 466 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 RN7SL51P-201ENST00000468230 285 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 RPL7P39-201ENST00000481157 744 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC090638.1-201ENST00000498296 909 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC024558.1-201ENST00000505008 528 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC008543.3-201ENST00000586983 491 ntTSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC006115.2-201ENST00000596823 202 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 PPATP2-201ENST00000605635 508 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AL022394.1-201ENST00000606979 292 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC090607.5-201ENST00000615692 224 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC037198.3-201ENST00000616754 526 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AL122125.1-201ENST00000616999 600 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AC132068.1-201ENST00000623805 459 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 SMG1P7-201ENST00000565246 2704 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 MATR3-230ENST00000394800 5513 ntTSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 KBTBD3-201ENST00000526793 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 AL158152.1-201ENST00000602652 1435 ntBASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 TOP2B-201ENST00000264331 5358 ntAPPRIS ALT2 TSL 5 BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TM9SF3Q9HD45 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms