Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC5.05□□□□□ -1.6
RFX4Q33E94 APOBEC3AP1-201ENST00000511396 287 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AC011405.1-204ENST00000512875 731 ntTSL 5 BASIC5.05□□□□□ -1.6
RFX4Q33E94 RNA5SP438-201ENST00000516561 112 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 CETN3-206ENST00000522864 738 ntTSL 3 BASIC5.05□□□□□ -1.6
RFX4Q33E94 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AP000648.1-201ENST00000529682 397 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.05□□□□□ -1.6
RFX4Q33E94 AL671883.2-201ENST00000539514 536 ntTSL 4 BASIC5.05□□□□□ -1.6
RFX4Q33E94 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RFX4Q33E94 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC5.05□□□□□ -1.6
RFX4Q33E94 AC006512.2-201ENST00000543250 486 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.05□□□□□ -1.6
RFX4Q33E94 AC079905.1-201ENST00000549280 475 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AC127381.1-201ENST00000555979 939 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 CYCSP38-201ENST00000559840 322 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC5.05□□□□□ -1.6
RFX4Q33E94 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.05□□□□□ -1.6
RFX4Q33E94 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.05□□□□□ -1.6
RFX4Q33E94 AL031601.1-201ENST00000605702 394 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AC016252.1-201ENST00000609721 474 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AC073592.6-201ENST00000624271 415 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.05□□□□□ -1.6
RFX4Q33E94 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
RFX4Q33E94 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RFX4Q33E94 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
RFX4Q33E94 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
RFX4Q33E94 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RFX4Q33E94 ZNF681-201ENST00000402377 6497 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RFX4Q33E94 SMG1P7-201ENST00000565246 2704 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 AC000374.1-201ENST00000434698 1745 ntBASIC5.05□□□□□ -1.6
RFX4Q33E94 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
RFX4Q33E94 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
RFX4Q33E94 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.05□□□□□ -1.6
RFX4Q33E94 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC5.05□□□□□ -1.6
RFX4Q33E94 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.05□□□□□ -1.6
RFX4Q33E94 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.05□□□□□ -1.6
RFX4Q33E94 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 CASC19-248ENST00000641674 1356 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
RFX4Q33E94 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.04□□□□□ -1.6
RFX4Q33E94 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.04□□□□□ -1.6
RFX4Q33E94 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.04□□□□□ -1.6
RFX4Q33E94 OR5P2-201ENST00000329434 1069 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
RFX4Q33E94 RNA5SP273-201ENST00000362484 113 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 KRTAP3-1-201ENST00000391588 594 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
RFX4Q33E94 RPL10P10-201ENST00000403509 664 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 RPSAP35-201ENST00000413753 818 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 AC108066.1-201ENST00000437261 596 ntTSL 4 BASIC5.04□□□□□ -1.6
RFX4Q33E94 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.04□□□□□ -1.6
RFX4Q33E94 LINC02083-201ENST00000462835 515 ntTSL 3 BASIC5.04□□□□□ -1.6
RFX4Q33E94 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.04□□□□□ -1.6
RFX4Q33E94 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.04□□□□□ -1.6
RFX4Q33E94 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.04□□□□□ -1.6
RFX4Q33E94 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.04□□□□□ -1.6
RFX4Q33E94 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.04□□□□□ -1.6
RFX4Q33E94 Y_RNA.667-201ENST00000516212 107 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 OR52E8-201ENST00000537935 1061 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
RFX4Q33E94 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.04□□□□□ -1.6
RFX4Q33E94 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.04□□□□□ -1.6
RFX4Q33E94 AC109583.2-201ENST00000617367 129 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 AC024884.1-201ENST00000620583 399 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 AP000648.2-201ENST00000624182 404 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.04□□□□□ -1.6
RFX4Q33E94 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC5.04□□□□□ -1.6
RFX4Q33E94 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
RFX4Q33E94 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.04□□□□□ -1.6
RFX4Q33E94 AC100778.3-201ENST00000580060 1750 ntBASIC5.04□□□□□ -1.6
RFX4Q33E94 AC118758.3-201ENST00000624628 24137 ntTSL 5 BASIC5.03□□□□□ -1.6
RFX4Q33E94 AC004817.4-201ENST00000602396 3625 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 ZNF652P1-201ENST00000442420 1309 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX4Q33E94 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
RFX4Q33E94 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC5.03□□□□□ -1.6
RFX4Q33E94 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
RFX4Q33E94 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC5.03□□□□□ -1.6
RFX4Q33E94 OR9G4-201ENST00000302957 984 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 TMSB4XP2-201ENST00000335179 210 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.03□□□□□ -1.6
RFX4Q33E94 RNU1-150P-201ENST00000362491 162 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 RN7SKP153-201ENST00000365026 316 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
RFX4Q33E94 MTND6P12-201ENST00000428247 522 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 AL022331.1-201ENST00000429025 477 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 AC124944.2-201ENST00000429866 1242 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC5.03□□□□□ -1.6
RFX4Q33E94 FTLP19-201ENST00000433300 394 ntBASIC5.03□□□□□ -1.6
RFX4Q33E94 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.03□□□□□ -1.6
RFX4Q33E94 AC092162.2-201ENST00000438143 532 ntTSL 4 BASIC5.03□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 97.8 ms