Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 OR6C5P-201ENST00000452388 923 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC147651.1-201ENST00000453149 572 ntTSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 DDX39BP2-208ENST00000453923 258 ntBASIC6.45□□□□□ -1.38
RNF4P78317 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 MTND1P16-201ENST00000465177 898 ntBASIC6.45□□□□□ -1.38
RNF4P78317 RPS4XP23-201ENST00000487801 237 ntBASIC6.45□□□□□ -1.38
RNF4P78317 RPS10P20-201ENST00000494130 463 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC114912.1-201ENST00000503394 546 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 AC093325.1-201ENST00000508378 326 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 LINC02055-203ENST00000520068 712 ntTSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 GRPEL2-AS1-201ENST00000521295 401 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 AP001000.1-201ENST00000526843 742 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AP003392.2-201ENST00000527269 208 ntBASIC6.45□□□□□ -1.38
RNF4P78317 OR8G3P-201ENST00000533406 921 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC005832.3-201ENST00000537929 631 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC007537.1-201ENST00000539347 327 ntBASIC6.45□□□□□ -1.38
RNF4P78317 LINC02413-201ENST00000549914 723 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC6.45□□□□□ -1.38
RNF4P78317 AL109628.1-201ENST00000556877 366 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 AC012254.2-203ENST00000588705 561 ntAPPRIS P5 TSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 AC091805.2-201ENST00000603848 235 ntBASIC6.45□□□□□ -1.38
RNF4P78317 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 AL352984.2-201ENST00000611153 546 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC013476.2-201ENST00000614456 459 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC023158.2-201ENST00000614876 543 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AL008636.1-201ENST00000625038 1018 ntBASIC6.45□□□□□ -1.38
RNF4P78317 CLEC3A-201ENST00000299642 1971 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 AC121761.1-201ENST00000547326 1482 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 NPHP3-AS1-202ENST00000504440 2507 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 TIMM9-202ENST00000395159 1336 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 AL512353.3-201ENST00000417517 1326 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC109315.1-201ENST00000584143 1347 ntBASIC6.45□□□□□ -1.38
RNF4P78317 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
RNF4P78317 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 AL022068.1-201ENST00000636202 1875 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 AC005614.1-201ENST00000598952 3653 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AJ009632.2-202ENST00000634644 1513 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 TMEM135-201ENST00000305494 2433 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 MTMR8-201ENST00000374852 2639 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 HSPD1P1-201ENST00000503199 1726 ntBASIC6.45□□□□□ -1.38
RNF4P78317 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 XPO1-202ENST00000404992 4105 ntAPPRIS P1 TSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 OFD1P15Y-201ENST00000411536 1392 ntBASIC6.44□□□□□ -1.38
RNF4P78317 ZNF117-203ENST00000610793 1374 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 SNX18P3-202ENST00000565670 1750 ntBASIC6.44□□□□□ -1.38
RNF4P78317 MIA3-201ENST00000340535 2735 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 MITF-206ENST00000394351 1956 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AC010894.3-202ENST00000412835 1405 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 LINC01492-201ENST00000411575 3738 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AC092447.7-201ENST00000422212 1621 ntBASIC6.44□□□□□ -1.38
RNF4P78317 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
RNF4P78317 KPNB1-203ENST00000540627 2989 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 NXF2B-205ENST00000618881 3193 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 IL5RA-201ENST00000256452 2001 ntAPPRIS P4 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 SPAG11B-201ENST00000297498 795 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 RNY3P14-201ENST00000384309 102 ntBASIC6.44□□□□□ -1.38
RNF4P78317 RNA5SP176-201ENST00000390956 110 ntBASIC6.44□□□□□ -1.38
RNF4P78317 FABP6-202ENST00000402432 572 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AL773545.3-201ENST00000414297 706 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 Z99497.1-201ENST00000421282 135 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC004448.2-201ENST00000422360 586 ntBASIC6.44□□□□□ -1.38
RNF4P78317 CYCSP46-201ENST00000423569 204 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AL591178.2-201ENST00000429191 461 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 FAM96AP1-201ENST00000430879 482 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC6.44□□□□□ -1.38
RNF4P78317 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 ANK3-207ENST00000460468 677 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 RN7SL492P-201ENST00000460700 295 ntBASIC6.44□□□□□ -1.38
RNF4P78317 RPS26P11-201ENST00000463445 348 ntBASIC6.44□□□□□ -1.38
RNF4P78317 NDUFA5P5-201ENST00000468361 342 ntBASIC6.44□□□□□ -1.38
RNF4P78317 RPS26P6-201ENST00000475156 348 ntBASIC6.44□□□□□ -1.38
RNF4P78317 RPS14P8-201ENST00000478778 369 ntBASIC6.44□□□□□ -1.38
RNF4P78317 RN7SL379P-201ENST00000479912 293 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC104685.1-201ENST00000502445 371 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC108159.1-201ENST00000505408 489 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 LINC01957-201ENST00000506392 751 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AC131392.1-201ENST00000506490 633 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC138866.2-201ENST00000508650 584 ntBASIC6.44□□□□□ -1.38
RNF4P78317 PGBD4P4-201ENST00000509673 613 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC008868.1-201ENST00000509786 737 ntBASIC6.44□□□□□ -1.38
RNF4P78317 GUSBP9-201ENST00000510138 584 ntBASIC6.44□□□□□ -1.38
RNF4P78317 SCARNA11.1-201ENST00000516918 132 ntBASIC6.44□□□□□ -1.38
RNF4P78317 CASC11-203ENST00000519071 791 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 IGHVIII-11-1-201ENST00000522733 267 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC245519.1-201ENST00000522799 512 ntTSL 4 BASIC6.44□□□□□ -1.38
RNF4P78317 SKP1-210ENST00000522855 802 ntAPPRIS P4 TSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 AP001636.3-202ENST00000525714 894 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AL355075.1-201ENST00000528210 468 ntTSL 2 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms