Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 CHMP1B2P-201ENST00000399581 597 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 PPIAP9-201ENST00000403866 498 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.68□□□□□ -1.5
COL4A4P53420 AC104634.1-201ENST00000452720 462 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 AC005341.1-201ENST00000571086 708 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.68□□□□□ -1.5
COL4A4P53420 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.68□□□□□ -1.5
COL4A4P53420 AC068790.7-201ENST00000602347 528 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 AP005432.2-201ENST00000608162 586 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 AL139124.1-201ENST00000609123 421 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.68□□□□□ -1.5
COL4A4P53420 WISP3-211ENST00000639360 1026 ntTSL 5 BASIC5.68□□□□□ -1.5
COL4A4P53420 SLC25A40-201ENST00000341119 4045 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 NXF4-202ENST00000416098 1465 ntBASIC5.68□□□□□ -1.5
COL4A4P53420 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
COL4A4P53420 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC5.67□□□□□ -1.5
COL4A4P53420 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 ACACA-226ENST00000612895 9624 ntTSL 5 BASIC5.67□□□□□ -1.5
COL4A4P53420 SLC23A2-202ENST00000379333 6962 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.67□□□□□ -1.5
COL4A4P53420 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.67□□□□□ -1.5
COL4A4P53420 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
COL4A4P53420 HPRT1P1-201ENST00000509498 657 ntBASIC5.67□□□□□ -1.5
COL4A4P53420 AL139022.1-201ENST00000556127 486 ntTSL 5 BASIC5.67□□□□□ -1.5
COL4A4P53420 AC060766.1-201ENST00000590824 627 ntBASIC5.67□□□□□ -1.5
COL4A4P53420 AC104687.2-201ENST00000604442 342 ntBASIC5.67□□□□□ -1.5
COL4A4P53420 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.67□□□□□ -1.5
COL4A4P53420 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 SETD5-205ENST00000407969 6463 ntTSL 5 BASIC5.67□□□□□ -1.5
COL4A4P53420 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC5.67□□□□□ -1.5
COL4A4P53420 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.67□□□□□ -1.5
COL4A4P53420 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 THAP12P4-201ENST00000528321 2266 ntBASIC5.67□□□□□ -1.5
COL4A4P53420 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.67□□□□□ -1.5
COL4A4P53420 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 TRPS1-203ENST00000395715 9990 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL4A4P53420 B3GALT5-203ENST00000380620 13170 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL4A4P53420 LINC01277-201ENST00000419957 2398 ntTSL 2 BASIC5.66□□□□□ -1.5
COL4A4P53420 MIPEPP2-201ENST00000422560 1819 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 RNA5SP479-201ENST00000364858 117 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 OR5M12P-201ENST00000423388 929 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC093655.2-201ENST00000425735 631 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.66□□□□□ -1.5
COL4A4P53420 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 AL513533.1-201ENST00000453728 415 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 RN7SL481P-201ENST00000477764 299 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AL161747.1-201ENST00000480068 358 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 RN7SL423P-201ENST00000486202 304 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.66□□□□□ -1.5
COL4A4P53420 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.66□□□□□ -1.5
COL4A4P53420 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
COL4A4P53420 AC009597.2-201ENST00000604659 592 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 SELE-205ENST00000367777 3576 ntTSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.66□□□□□ -1.5
COL4A4P53420 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.66□□□□□ -1.5
COL4A4P53420 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL4A4P53420 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC5.66□□□□□ -1.5
COL4A4P53420 SLC4A10-201ENST00000272716 3414 ntTSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 LINC02035-201ENST00000610128 5476 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.66□□□□□ -1.5
COL4A4P53420 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.66□□□□□ -1.5
COL4A4P53420 MON2-202ENST00000393630 13275 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL4A4P53420 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL4A4P53420 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL4A4P53420 AC079777.1-201ENST00000623836 1953 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
COL4A4P53420 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.66□□□□□ -1.5
COL4A4P53420 RPL10P10-201ENST00000403509 664 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AL009179.1-201ENST00000406085 265 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 CNOT7P1-201ENST00000429006 852 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AL590399.4-201ENST00000436561 601 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.66□□□□□ -1.5
COL4A4P53420 NDUFA5P8-201ENST00000449019 346 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC026979.1-201ENST00000492525 396 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 IGBP1P5-201ENST00000507524 1000 ntBASIC5.66□□□□□ -1.5
COL4A4P53420 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC5.66□□□□□ -1.5
COL4A4P53420 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.66□□□□□ -1.5
COL4A4P53420 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
COL4A4P53420 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms