Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 RGS1-203ENST00000469578 1034 ntTSL 2 BASIC5.56□□□□□ -1.52
HNF4AP41235 OR7E157P-201ENST00000494376 911 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 GLUD1P3-202ENST00000508551 200 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC5.56□□□□□ -1.52
HNF4AP41235 SNORA70.17-201ENST00000516449 133 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 AC060775.1-201ENST00000518241 520 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.56□□□□□ -1.52
HNF4AP41235 ANAPC15-205ENST00000535503 734 ntAPPRIS P3 TSL 3 BASIC5.56□□□□□ -1.52
HNF4AP41235 AC009962.1-201ENST00000567327 3813 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.56□□□□□ -1.52
HNF4AP41235 AL365181.4-201ENST00000609800 547 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 MIR6778-201ENST00000617912 73 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 AF117829.2-201ENST00000619538 361 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 AC022400.9-201ENST00000623633 273 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.56□□□□□ -1.52
HNF4AP41235 AC079776.5-201ENST00000641920 211 ntBASIC5.56□□□□□ -1.52
HNF4AP41235 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.56□□□□□ -1.52
HNF4AP41235 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.56□□□□□ -1.52
HNF4AP41235 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 MROH2B-201ENST00000399564 5239 ntAPPRIS P1 TSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
HNF4AP41235 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC091305.2-201ENST00000624049 1576 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 SCGB3A2-201ENST00000296694 515 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 ST13P16-201ENST00000401760 781 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC5.55□□□□□ -1.52
HNF4AP41235 IPPKP1-201ENST00000422501 768 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC5.55□□□□□ -1.52
HNF4AP41235 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC093716.1-201ENST00000435923 377 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.55□□□□□ -1.52
HNF4AP41235 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 RN7SL570P-201ENST00000484405 292 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 NPM1P28-201ENST00000492269 840 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 HMGN2P36-201ENST00000529541 409 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 AP000648.1-201ENST00000529682 397 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC5.55□□□□□ -1.52
HNF4AP41235 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.55□□□□□ -1.52
HNF4AP41235 MEG8-217ENST00000556637 924 ntTSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 COX6CP7-201ENST00000597056 208 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 AL031601.1-201ENST00000605702 394 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 AL096712.1-201ENST00000614561 159 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 AL035661.1-201ENST00000620459 1144 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC092159.4-201ENST00000624944 550 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 5S_rRNA.28-201ENST00000638107 119 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 AL022311.1-201ENST00000623726 19416 ntBASIC5.55□□□□□ -1.52
HNF4AP41235 OAZ3-204ENST00000479764 3789 ntTSL 5 BASIC5.55□□□□□ -1.52
HNF4AP41235 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.55□□□□□ -1.52
HNF4AP41235 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.55□□□□□ -1.52
HNF4AP41235 AC004076.2-201ENST00000620532 3323 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.54□□□□□ -1.52
HNF4AP41235 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.54□□□□□ -1.52
HNF4AP41235 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.54□□□□□ -1.52
HNF4AP41235 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.54□□□□□ -1.52
HNF4AP41235 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 RN7SKP81-201ENST00000365603 331 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 SNORA5.1-201ENST00000384275 131 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AC087752.1-201ENST00000391360 558 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 AC245060.4-201ENST00000413293 1121 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 RNF10P1-201ENST00000418589 369 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AK4P4-201ENST00000419465 646 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 AL136131.2-201ENST00000424283 348 ntTSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 MAJIN-202ENST00000432175 838 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HNF4AP41235 PCNPP2-201ENST00000441651 455 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC5.54□□□□□ -1.52
HNF4AP41235 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC5.54□□□□□ -1.52
HNF4AP41235 RPSAP39-201ENST00000467439 883 ntBASIC5.54□□□□□ -1.52
HNF4AP41235 RPS7P6-201ENST00000485777 579 ntBASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms