Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC7.23□□□□□ -1.25
HMGB1P09429 RN7SL362P-201ENST00000494228 267 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 AC092916.1-201ENST00000497896 411 ntTSL 3 BASIC7.23□□□□□ -1.25
HMGB1P09429 AC108866.1-203ENST00000504106 529 ntTSL 3 BASIC7.23□□□□□ -1.25
HMGB1P09429 AC108103.1-201ENST00000511286 446 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC7.23□□□□□ -1.25
HMGB1P09429 AC023905.1-201ENST00000559799 1178 ntTSL 2 BASIC7.23□□□□□ -1.25
HMGB1P09429 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC7.23□□□□□ -1.25
HMGB1P09429 AC009027.1-201ENST00000604510 479 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 C5orf63-207ENST00000606937 607 ntTSL 2 BASIC7.23□□□□□ -1.25
HMGB1P09429 AL135999.3-201ENST00000610501 812 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 AL080312.2-201ENST00000613001 630 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 AC009318.3-201ENST00000616916 503 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 FO681491.1-202ENST00000623392 737 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 AL358975.1-202ENST00000628133 589 ntTSL 5 BASIC7.23□□□□□ -1.25
HMGB1P09429 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC7.23□□□□□ -1.25
HMGB1P09429 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC7.23□□□□□ -1.25
HMGB1P09429 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC7.23□□□□□ -1.25
HMGB1P09429 AL133268.1-201ENST00000405676 1401 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 DAZ2-204ENST00000382431 3637 ntAPPRIS ALT2 TSL 1 (best) BASIC7.23□□□□□ -1.25
HMGB1P09429 EIF3EP1-201ENST00000433978 1316 ntBASIC7.23□□□□□ -1.25
HMGB1P09429 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.23□□□□□ -1.25
HMGB1P09429 ESRRG-202ENST00000360012 5431 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 CTAGE5-201ENST00000280082 2554 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 ERAP2-202ENST00000437043 5705 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 METTL21EP-201ENST00000298105 713 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 CRP-204ENST00000368112 787 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 TRAV36DV7-201ENST00000390463 356 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
HMGB1P09429 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 FAM183DP-201ENST00000421987 399 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC7.22□□□□□ -1.25
HMGB1P09429 AC010890.1-202ENST00000432414 535 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 ARL4AP4-201ENST00000434170 518 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AL022337.1-201ENST00000434510 357 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 ARPP21-218ENST00000438071 1103 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 SH2D1A-203ENST00000477673 461 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 RN7SL205P-201ENST00000490174 284 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 RN7SL568P-201ENST00000493069 298 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC7.22□□□□□ -1.25
HMGB1P09429 AP000842.2-202ENST00000526211 569 ntTSL 4 BASIC7.22□□□□□ -1.25
HMGB1P09429 AC021269.1-201ENST00000526860 705 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 KCTD21-AS1-203ENST00000527321 586 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 BICD1-206ENST00000551086 423 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 AL049779.3-201ENST00000557141 606 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 C15orf41-203ENST00000562489 715 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 AC134669.1-201ENST00000581275 672 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 AC119403.2-201ENST00000590960 598 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AC011500.1-201ENST00000601963 469 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AF230666.2-201ENST00000602328 725 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AP003117.1-201ENST00000602771 554 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 LINC02335-201ENST00000616578 659 ntTSL 3 BASIC7.22□□□□□ -1.25
HMGB1P09429 MIR6813-201ENST00000621638 56 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC7.22□□□□□ -1.25
HMGB1P09429 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
HMGB1P09429 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC7.22□□□□□ -1.25
HMGB1P09429 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC7.22□□□□□ -1.25
HMGB1P09429 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC7.22□□□□□ -1.25
HMGB1P09429 AC022325.1-201ENST00000502748 2199 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AC092724.1-201ENST00000624623 3397 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 AL662795.2-201ENST00000624252 3706 ntBASIC7.22□□□□□ -1.25
HMGB1P09429 ANGPT1-205ENST00000520052 1523 ntTSL 5 BASIC7.22□□□□□ -1.25
HMGB1P09429 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC7.21□□□□□ -1.25
HMGB1P09429 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC7.21□□□□□ -1.25
HMGB1P09429 BCL2L14-213ENST00000589718 1850 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.25
HMGB1P09429 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC7.21□□□□□ -1.25
HMGB1P09429 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC7.21□□□□□ -1.25
HMGB1P09429 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC7.21□□□□□ -1.25
HMGB1P09429 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.25
HMGB1P09429 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC7.21□□□□□ -1.25
HMGB1P09429 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC7.21□□□□□ -1.26
HMGB1P09429 RXFP1-211ENST00000613319 3771 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
HMGB1P09429 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC7.21□□□□□ -1.26
HMGB1P09429 AL355834.1-201ENST00000556602 3965 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 SNORA21-201ENST00000362423 132 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 RN7SKP250-201ENST00000363924 321 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC7.21□□□□□ -1.26
HMGB1P09429 S100A5-201ENST00000368717 506 ntAPPRIS P1 TSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 TRAV14DV4-201ENST00000390440 425 ntAPPRIS P1 BASIC7.21□□□□□ -1.26
HMGB1P09429 AL096800.1-201ENST00000405326 893 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 RPL35AP31-201ENST00000418340 337 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC7.21□□□□□ -1.26
HMGB1P09429 THEM7P-201ENST00000419556 672 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC130360.1-201ENST00000425489 1117 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC024601.1-201ENST00000427247 524 ntTSL 3 BASIC7.21□□□□□ -1.26
HMGB1P09429 EIF2S2P3-201ENST00000428356 999 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 DYNLL1P7-201ENST00000429273 258 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 PSMD10P2-201ENST00000432890 672 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 C1orf143-201ENST00000443836 762 ntTSL 2 BASIC7.21□□□□□ -1.26
HMGB1P09429 ARL5AP2-201ENST00000444698 533 ntBASIC7.21□□□□□ -1.26
HMGB1P09429 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC7.21□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms