Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 GABRA1-215ENST00000636573 2262 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
COL3A1P02461 AP000547.3-204ENST00000588548 2523 ntBASIC6.97□□□□□ -1.29
COL3A1P02461 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC6.97□□□□□ -1.29
COL3A1P02461 AC079298.1-201ENST00000625026 1619 ntBASIC6.97□□□□□ -1.29
COL3A1P02461 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.29
COL3A1P02461 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.96□□□□□ -1.29
COL3A1P02461 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC6.96□□□□□ -1.29
COL3A1P02461 MAPK10-263ENST00000641052 4307 ntBASIC6.96□□□□□ -1.29
COL3A1P02461 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC6.96□□□□□ -1.29
COL3A1P02461 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC6.96□□□□□ -1.3
COL3A1P02461 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 AC073429.2-201ENST00000569694 1444 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC6.96□□□□□ -1.3
COL3A1P02461 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC6.96□□□□□ -1.3
COL3A1P02461 RN7SKP216-201ENST00000411050 312 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 RFESDP1-201ENST00000422350 461 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC013410.2-201ENST00000422627 201 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.96□□□□□ -1.3
COL3A1P02461 AC073850.1-201ENST00000449243 255 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC6.96□□□□□ -1.3
COL3A1P02461 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC6.96□□□□□ -1.3
COL3A1P02461 RNU6-362P-201ENST00000516736 90 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC6.96□□□□□ -1.3
COL3A1P02461 AC013701.1-201ENST00000522657 465 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC025423.2-201ENST00000537570 439 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC6.96□□□□□ -1.3
COL3A1P02461 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC6.96□□□□□ -1.3
COL3A1P02461 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC6.96□□□□□ -1.3
COL3A1P02461 AC011447.4-201ENST00000587562 111 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC008277.1-203ENST00000594921 1149 ntTSL 5 BASIC6.96□□□□□ -1.3
COL3A1P02461 BNIP3P35-201ENST00000604530 490 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AL162431.4-201ENST00000604674 411 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC024940.4-201ENST00000605507 246 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC015660.5-201ENST00000623238 564 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 AC074101.1-201ENST00000637861 241 ntBASIC6.96□□□□□ -1.3
COL3A1P02461 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.96□□□□□ -1.3
COL3A1P02461 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC6.96□□□□□ -1.3
COL3A1P02461 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 DNAJC28-202ENST00000381947 1354 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
COL3A1P02461 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC6.95□□□□□ -1.3
COL3A1P02461 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 AC002090.1-201ENST00000625000 2138 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.95□□□□□ -1.3
COL3A1P02461 SEPT7P2-202ENST00000398921 823 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 Y_RNA.625-201ENST00000411256 107 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 RPL7AP49-201ENST00000429522 581 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 AL591438.1-201ENST00000433508 581 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC6.95□□□□□ -1.3
COL3A1P02461 OTX2P1-201ENST00000450956 354 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC6.95□□□□□ -1.3
COL3A1P02461 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC6.95□□□□□ -1.3
COL3A1P02461 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 AC092593.2-201ENST00000513866 913 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 EIF3KP3-201ENST00000514461 639 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC6.95□□□□□ -1.3
COL3A1P02461 NQO1-206ENST00000564043 892 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 AL132657.2-201ENST00000564417 358 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 MTCYBP13-201ENST00000578634 1093 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 AC087385.3-201ENST00000620477 187 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 AC023421.1-201ENST00000590535 1785 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 FGL2-201ENST00000248598 4261 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC6.95□□□□□ -1.3
COL3A1P02461 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 NIPA1-202ENST00000437912 7613 ntAPPRIS ALT2 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.95□□□□□ -1.3
COL3A1P02461 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.95□□□□□ -1.3
COL3A1P02461 AC007342.5-201ENST00000571340 2142 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
COL3A1P02461 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC6.94□□□□□ -1.3
COL3A1P02461 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
COL3A1P02461 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC6.94□□□□□ -1.3
COL3A1P02461 NACA-203ENST00000454682 6629 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC6.94□□□□□ -1.3
COL3A1P02461 RNA5SP453-201ENST00000362503 119 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 RNU6ATAC7P-201ENST00000408111 127 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 RN7SKP213-201ENST00000410746 298 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
COL3A1P02461 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC6.94□□□□□ -1.3
COL3A1P02461 RPS11P7-201ENST00000442125 465 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC6.94□□□□□ -1.3
COL3A1P02461 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.94□□□□□ -1.3
COL3A1P02461 NDUFA5P12-201ENST00000503796 343 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 RNA5SP116-201ENST00000516132 98 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 IGLV2-28-201ENST00000520681 304 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC6.94□□□□□ -1.3
COL3A1P02461 AC027369.5-201ENST00000533838 755 ntBASIC6.94□□□□□ -1.3
COL3A1P02461 APPL2-203ENST00000546731 684 ntTSL 2 BASIC6.94□□□□□ -1.3
COL3A1P02461 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.94□□□□□ -1.3
COL3A1P02461 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.94□□□□□ -1.3
COL3A1P02461 RN7SL290P-201ENST00000578661 300 ntBASIC6.94□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 192.3 ms