Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
TCRBV7S3A2A0A539 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC144833.1-201ENST00000567953 4089 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AP001029.2-203ENST00000589795 4910 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 OFD1P17-201ENST00000437639 3018 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 LINC01204-202ENST00000435394 2214 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC025428.2-201ENST00000435367 2672 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC097717.1-233ENST00000413557 460 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 IFNA17-201ENST00000413767 980 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 RNF10P1-201ENST00000418589 369 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 SFR1P2-201ENST00000421841 730 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AL138789.1-201ENST00000425820 960 ntTSL 2 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 MTCO1P51-201ENST00000427672 1060 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC110602.1-201ENST00000437414 318 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC006326.1-201ENST00000445465 787 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC118758.1-202ENST00000454719 225 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 UBFD1P1-201ENST00000473259 814 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 ARPP21-231ENST00000474696 572 ntTSL 2 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 RNU6-415P-201ENST00000516252 97 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC138701.1-201ENST00000524329 714 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 OR5AM1P-201ENST00000532136 1032 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC026826.3-201ENST00000561747 158 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC002310.3-201ENST00000569728 723 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 MIR4760-201ENST00000585040 80 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 RPAP2P1-201ENST00000603626 1168 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC008555.3-201ENST00000603717 442 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC026979.4-201ENST00000606555 645 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC090607.5-201ENST00000615692 224 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AL645927.2-201ENST00000618350 349 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 FAM19A2-215ENST00000551619 2718 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 IKZF3-213ENST00000439167 1879 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 ANK2-226ENST00000612754 6134 ntTSL 5 BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 EEF1A1P21-201ENST00000512363 1344 ntBASIC5.7□□□□□ -1.5
TCRBV7S3A2A0A539 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AL359715.3-201ENST00000569267 2123 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 SCAMP1-206ENST00000618166 1358 ntTSL 2 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 OR14A16-202ENST00000641093 1367 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 GTF2H5-201ENST00000607778 7481 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 SNORA72.3-201ENST00000365074 132 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 RNU6-650P-201ENST00000365658 111 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 CDC123-202ENST00000378900 933 ntTSL 5 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AL512637.2-201ENST00000431287 1256 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 HMGB3P24-201ENST00000433260 622 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 MTND2P21-201ENST00000436242 1042 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 CCRL1P1-201ENST00000449542 1053 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 CTSLP6-201ENST00000458273 1002 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 NXT1P1-201ENST00000458481 316 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AC021106.1-201ENST00000509020 1058 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AC093770.1-201ENST00000511559 571 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 GTF2IP11-201ENST00000526931 420 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AP000648.1-201ENST00000529682 397 ntBASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 TSPAN19-204ENST00000532498 998 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AC002056.2-201ENST00000532913 284 ntTSL 5 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC5.69□□□□□ -1.5
TCRBV7S3A2A0A539 AP002383.3-201ENST00000545958 593 ntTSL 4 BASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 106.6 ms