Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 MIR320B1-201ENST00000390209 79 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC090114.1-201ENST00000393266 448 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC099535.1-201ENST00000408928 371 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 RNA5SP118-201ENST00000410385 109 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 Y_RNA.608-201ENST00000410647 95 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 RSU1P3-201ENST00000412878 835 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AL662791.3-201ENST00000413771 776 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AL773545.3-201ENST00000414297 706 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC106900.1-201ENST00000418620 456 ntTSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC002504.1-201ENST00000438281 691 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC092809.1-201ENST00000441469 474 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 GTF2F2P2-201ENST00000445825 721 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 WDR11-AS1-201ENST00000451706 1108 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC022364.2-201ENST00000457963 554 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 RN7SL688P-201ENST00000471754 275 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 RPS4XP17-201ENST00000479057 754 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 RN7SL741P-201ENST00000482473 289 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 RPL23AP80-201ENST00000495605 424 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC112204.1-201ENST00000502591 103 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC111000.3-201ENST00000508057 576 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC083902.1-201ENST00000508578 359 ntTSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC113352.1-201ENST00000513196 666 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC068134.3-201ENST00000513620 788 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AP003467.2-201ENST00000520175 319 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 OR8A2P-201ENST00000528631 952 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 SMCO2-203ENST00000535986 1096 ntAPPRIS P2 TSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AP005121.1-201ENST00000578243 469 ntTSL 3 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC245014.2-201ENST00000603689 287 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC013553.2-201ENST00000604244 589 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC246785.4-201ENST00000605374 287 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC000068.3-201ENST00000607934 427 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AL136295.6-201ENST00000610486 658 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC104010.1-201ENST00000616889 150 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 PACRG-211ENST00000621363 360 ntTSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC073862.4-201ENST00000622982 854 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 BCAS3-234ENST00000639611 108 ntTSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AL596275.2-203ENST00000641951 371 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 PARP9-202ENST00000462315 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 ZNF845-202ENST00000595091 4413 ntAPPRIS P1 TSL 4 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 NEK11-201ENST00000356918 1874 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 ZNF540-202ENST00000343599 3073 ntAPPRIS P3 TSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 NAA40-202ENST00000377793 3664 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 SMIM31-201ENST00000507311 3123 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 RPS6KA6-201ENST00000262752 2547 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 MGAT4A-201ENST00000264968 8432 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC105046.1-201ENST00000566457 4997 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 PTPN3-201ENST00000262539 6832 ntTSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 PPM1L-205ENST00000498165 10934 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 PIWIL4-201ENST00000299001 3199 ntAPPRIS P1 TSL 1 (best) BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 POGK-201ENST00000367875 6254 ntAPPRIS P1 TSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AC087501.5-201ENST00000607496 2374 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 AL136981.1-203ENST00000451452 3844 ntBASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 TMEM52B-203ENST00000381923 2601 ntAPPRIS ALT2 TSL 5 BASIC7.97□□□□□ -1.13
LIMD1Q9UGP4 MYOCD-203ENST00000425538 8466 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 GOLGB1-209ENST00000614479 11115 ntAPPRIS ALT2 TSL 1 (best) BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 HPGDS-201ENST00000295256 1636 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 NPIPB15-201ENST00000429990 1428 ntAPPRIS P1 TSL 5 BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 MTND5P23-201ENST00000430812 1655 ntBASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 MATR3-229ENST00000361059 3970 ntAPPRIS P1 TSL 2 BASIC7.96□□□□□ -1.13
LIMD1Q9UGP4 DCX-208ENST00000636035 9269 ntAPPRIS ALT1 TSL 2 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 ACTR6-209ENST00000551617 1715 ntTSL 5 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 TMEM182-203ENST00000412401 3593 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 RIT2-201ENST00000326695 1092 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 RNA5SP260-201ENST00000363849 111 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AL139327.1-201ENST00000382988 348 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AL591368.1-202ENST00000413050 548 ntTSL 3 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 PSMA4-202ENST00000413382 1019 ntTSL 1 (best) BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 VDAC1P10-201ENST00000416715 891 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 HMGB3P20-201ENST00000417997 600 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AC127537.1-201ENST00000418183 748 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 CYP4F34P-201ENST00000425951 481 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AL604028.2-201ENST00000437848 788 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 PPIAP32-201ENST00000449940 472 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AC092567.1-201ENST00000452397 251 ntTSL 3 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 TFP1-201ENST00000460564 572 ntTSL 4 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AC025271.1-201ENST00000485045 429 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 TFP1-203ENST00000490470 561 ntTSL 4 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 RPL10P7-201ENST00000495649 625 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AC098587.1-201ENST00000508241 540 ntTSL 4 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 RNU6-1281P-201ENST00000516223 105 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 FBXO16-208ENST00000519471 398 ntTSL 2 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AC015468.2-201ENST00000519605 550 ntTSL 3 BASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 IGKV2D-10-201ENST00000520194 281 ntBASIC7.96□□□□□ -1.14
LIMD1Q9UGP4 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC7.96□□□□□ -1.14
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms