Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AC068287.1-201ENST00000430283 295 ntBASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 AC112498.1-201ENST00000444401 332 ntBASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 OR11I1P-201ENST00000486033 954 ntBASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 AC140172.1-201ENST00000502928 141 ntBASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 AF233439.1-201ENST00000526235 401 ntTSL 3 BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 AL590392.1-201ENST00000604960 446 ntBASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 AC073869.8-201ENST00000641806 335 ntBASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 ARL14EPL-201ENST00000601302 1914 ntAPPRIS P1 TSL 5 BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 KIAA0100-201ENST00000389003 6852 ntAPPRIS ALT2 TSL 5 BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 HNRNPA1P54-201ENST00000411857 9714 ntBASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC6.83□□□□□ -1.32
SHANK3Q9BYB0 GALK2-201ENST00000327171 5299 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 ZNF208-201ENST00000397126 3992 ntAPPRIS P1 TSL 3 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 RNA5SP515-201ENST00000364570 118 ntBASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 MIR134-201ENST00000385258 73 ntBASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 PPIAP9-201ENST00000403866 498 ntBASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 OR2AM1P-201ENST00000422137 422 ntBASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 BX323845.1-201ENST00000432417 179 ntBASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 RPL5P25-201ENST00000441148 775 ntBASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 CASR-205ENST00000639785 10047 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 POGZ-213ENST00000491586 4130 ntTSL 5 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 ARHGEF12-201ENST00000356641 6891 ntTSL 5 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 JADE3-203ENST00000611250 4713 ntAPPRIS P1 TSL 2 BASIC6.82□□□□□ -1.32
SHANK3Q9BYB0 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AP002530.1-201ENST00000405705 684 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 RPL12P17-201ENST00000432393 498 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 snoU13.22-201ENST00000459428 104 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 OR7E128P-201ENST00000532736 1024 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AC233699.1-201ENST00000569955 1168 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AP003400.3-201ENST00000624904 346 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 GABRQ-201ENST00000598523 6172 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 SRPX2-201ENST00000373004 6679 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 RNA5SP113-201ENST00000410486 84 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 TRGV7-201ENST00000427089 353 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 BMS1P19-201ENST00000433925 393 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 TRIM60P9Y-201ENST00000438459 816 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 TRIM60P11Y-201ENST00000445313 801 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AL354714.3-201ENST00000447284 493 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 CXorf51A-201ENST00000458472 431 ntAPPRIS P1 TSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AC006427.1-201ENST00000514359 712 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AC098935.2-201ENST00000604222 466 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 MIR6780A-201ENST00000615089 68 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 AC006338.2-201ENST00000616864 791 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 ZNRD1ASP-221ENST00000637794 1074 ntBASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 ZNF43-205ENST00000594012 5584 ntAPPRIS ALT2 TSL 2 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 CNR1-202ENST00000369499 5549 ntAPPRIS P1 TSL 5 BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC6.81□□□□□ -1.32
SHANK3Q9BYB0 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 AL359195.2-201ENST00000623657 4412 ntBASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
SHANK3Q9BYB0 FRYL-210ENST00000507711 5277 ntTSL 2 BASIC6.8□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 98.1 ms