Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 RCAN2-201ENST00000306764 3240 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 CTNND1-229ENST00000531014 5053 ntTSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 RBMXL1-201ENST00000321792 4799 ntAPPRIS P1 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.61□□□□□ -1.35
CCDC88AQ3V6T2 UTP14C-201ENST00000521776 5529 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 DNAJA1P3-201ENST00000399417 1194 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 NECTIN3-AS1-205ENST00000491709 792 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 MIR1254-2-201ENST00000579553 63 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AL392048.1-201ENST00000613946 534 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC074101.1-201ENST00000637861 241 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 ATP5A1P1-201ENST00000454088 1321 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC007114.2-201ENST00000576014 4281 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 SLC5A12-201ENST00000280467 2269 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 ZNF761-203ENST00000454407 3967 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 RN7SL188P-201ENST00000469842 285 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 RN7SL481P-201ENST00000477764 299 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC134349.2-201ENST00000535136 910 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC011447.4-201ENST00000587562 111 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AL513327.3-201ENST00000602618 469 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AC104687.2-201ENST00000604442 342 ntBASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
CCDC88AQ3V6T2 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 ZRANB3-210ENST00000536680 6943 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 MTOR-202ENST00000376838 4017 ntTSL 2 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 FAM3C2-201ENST00000312214 681 ntBASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 OR5M12P-201ENST00000423388 929 ntBASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 AL451063.1-201ENST00000450164 1133 ntBASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 ZNF273-204ENST00000476120 2000 ntAPPRIS P1 TSL 3 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 BTF3P13-201ENST00000513224 490 ntBASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 GAPDHP62-201ENST00000515313 990 ntBASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 MAL2-208ENST00000523307 556 ntTSL 4 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 OR11H3P-201ENST00000554547 982 ntBASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 AC135068.5-201ENST00000624197 983 ntBASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 KCNA2-209ENST00000639048 10836 ntTSL 5 BASIC6.59□□□□□ -1.35
CCDC88AQ3V6T2 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.36
CCDC88AQ3V6T2 OR52N5-202ENST00000641181 2778 ntAPPRIS P1 BASIC6.59□□□□□ -1.36
CCDC88AQ3V6T2 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.36
CCDC88AQ3V6T2 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 NXF4-202ENST00000416098 1465 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AL354868.1-201ENST00000417077 482 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AL161747.1-201ENST00000480068 358 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC105411.1-203ENST00000568819 601 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC060766.1-201ENST00000590824 627 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AC098935.2-201ENST00000604222 466 ntBASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 SLC1A3-215ENST00000612708 3832 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 UGP2-232ENST00000640075 567 ntTSL 5 BASIC6.58□□□□□ -1.36
CCDC88AQ3V6T2 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.58□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms