Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC6.46□□□□□ -1.38
RNF4P78317 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
RNF4P78317 RNU4-31P-201ENST00000384211 141 ntBASIC6.46□□□□□ -1.38
RNF4P78317 MIR525-201ENST00000384978 85 ntBASIC6.46□□□□□ -1.38
RNF4P78317 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 MTCYBP38-201ENST00000417160 1123 ntBASIC6.46□□□□□ -1.38
RNF4P78317 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 AL357375.1-201ENST00000424274 525 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 EIF4A1P5-201ENST00000428062 1095 ntBASIC6.46□□□□□ -1.38
RNF4P78317 BX119917.1-201ENST00000432517 502 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AL353093.1-201ENST00000441292 436 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 AC023271.1-201ENST00000445936 1090 ntBASIC6.46□□□□□ -1.38
RNF4P78317 DEFA11P-201ENST00000446470 261 ntBASIC6.46□□□□□ -1.38
RNF4P78317 ZNF619P1-201ENST00000446539 752 ntBASIC6.46□□□□□ -1.38
RNF4P78317 RPL36AP33-201ENST00000450395 310 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC009244.1-201ENST00000450566 258 ntBASIC6.46□□□□□ -1.38
RNF4P78317 Z98749.1-201ENST00000454123 541 ntTSL 5 BASIC6.46□□□□□ -1.38
RNF4P78317 PSMC1P13-201ENST00000458195 985 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC026353.1-201ENST00000470523 558 ntTSL 2 BASIC6.46□□□□□ -1.38
RNF4P78317 AC117395.1-201ENST00000487390 403 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC122714.1-201ENST00000502510 459 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC098487.1-203ENST00000512915 546 ntTSL 5 BASIC6.46□□□□□ -1.38
RNF4P78317 FABP5P5-201ENST00000515537 406 ntBASIC6.46□□□□□ -1.38
RNF4P78317 COMMD10-206ENST00000515539 869 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 AC114550.1-201ENST00000518846 573 ntTSL 4 BASIC6.46□□□□□ -1.38
RNF4P78317 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC6.46□□□□□ -1.38
RNF4P78317 AC105999.2-201ENST00000521363 881 ntTSL 2 BASIC6.46□□□□□ -1.38
RNF4P78317 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 OPRM1-223ENST00000524163 1251 ntAPPRIS ALT1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 OR4A21P-201ENST00000532759 944 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC130360.2-201ENST00000533477 1556 ntBASIC6.46□□□□□ -1.38
RNF4P78317 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
RNF4P78317 AC016526.1-201ENST00000555465 520 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC6.46□□□□□ -1.38
RNF4P78317 AC013652.2-202ENST00000558948 910 ntTSL 3 BASIC6.46□□□□□ -1.38
RNF4P78317 NR2F2-AS1-209ENST00000560800 549 ntTSL 4 BASIC6.46□□□□□ -1.38
RNF4P78317 RAB27A-205ENST00000564609 1057 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 AC116003.2-201ENST00000579278 748 ntTSL 2 BASIC6.46□□□□□ -1.38
RNF4P78317 AC015818.3-202ENST00000579603 283 ntTSL 5 BASIC6.46□□□□□ -1.38
RNF4P78317 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC6.46□□□□□ -1.38
RNF4P78317 AC010463.3-201ENST00000594077 500 ntBASIC6.46□□□□□ -1.38
RNF4P78317 BNIP3P4-201ENST00000604946 565 ntBASIC6.46□□□□□ -1.38
RNF4P78317 LINC02019-202ENST00000609204 845 ntTSL 2 BASIC6.46□□□□□ -1.38
RNF4P78317 AC024941.1-201ENST00000612250 334 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC025594.3-201ENST00000613068 790 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC116165.3-201ENST00000614524 400 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC026368.1-201ENST00000614934 690 ntBASIC6.46□□□□□ -1.38
RNF4P78317 STMN1P1-201ENST00000617809 440 ntBASIC6.46□□□□□ -1.38
RNF4P78317 SMARCA2-229ENST00000634781 1106 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 AC183089.2-201ENST00000637931 916 ntBASIC6.46□□□□□ -1.38
RNF4P78317 AC087565.3-203ENST00000641018 837 ntBASIC6.46□□□□□ -1.38
RNF4P78317 MAPK10-261ENST00000641050 3109 ntBASIC6.46□□□□□ -1.38
RNF4P78317 HTR1D-201ENST00000374619 2835 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
RNF4P78317 AC025263.1-201ENST00000501387 2538 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 SMG1-210ENST00000565224 2372 ntTSL 5 BASIC6.46□□□□□ -1.38
RNF4P78317 TMC3-AS1-206ENST00000612811 2726 ntBASIC6.46□□□□□ -1.38
RNF4P78317 DEFB132-201ENST00000382376 2121 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
RNF4P78317 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
RNF4P78317 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 SENP8-201ENST00000340912 4281 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 UNC79-203ENST00000553484 9100 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 MC2R-201ENST00000327606 3656 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 LRRC37B-203ENST00000394713 3025 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 DUXAP8-203ENST00000437781 2398 ntTSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 ADAL-203ENST00000428046 3514 ntTSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 PAPD4-203ENST00000428308 2204 ntAPPRIS P3 TSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 SPATA2P1-201ENST00000431223 2055 ntBASIC6.45□□□□□ -1.38
RNF4P78317 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 BNC2-203ENST00000380672 12844 ntAPPRIS P2 TSL 2 BASIC6.45□□□□□ -1.38
RNF4P78317 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 AC138915.4-201ENST00000565549 4147 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AL355306.2-202ENST00000634380 2281 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
RNF4P78317 TMSB4XP2-201ENST00000335179 210 ntBASIC6.45□□□□□ -1.38
RNF4P78317 ATF3-201ENST00000336937 482 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 AC136624.1-201ENST00000400791 413 ntBASIC6.45□□□□□ -1.38
RNF4P78317 OR8G2P-201ENST00000412796 908 ntBASIC6.45□□□□□ -1.38
RNF4P78317 TPT1P2-201ENST00000413105 503 ntBASIC6.45□□□□□ -1.38
RNF4P78317 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 CD33-203ENST00000421133 1023 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
RNF4P78317 MRPS36P1-201ENST00000421291 307 ntBASIC6.45□□□□□ -1.38
RNF4P78317 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 AC004160.1-205ENST00000428967 577 ntTSL 4 BASIC6.45□□□□□ -1.38
RNF4P78317 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.45□□□□□ -1.38
RNF4P78317 AC245140.1-201ENST00000433825 341 ntTSL 5 BASIC6.45□□□□□ -1.38
RNF4P78317 AL596276.1-201ENST00000434465 418 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC009263.1-201ENST00000441193 1239 ntBASIC6.45□□□□□ -1.38
RNF4P78317 RBMX2P4-201ENST00000441256 376 ntBASIC6.45□□□□□ -1.38
RNF4P78317 TRIM60P18-201ENST00000441518 828 ntBASIC6.45□□□□□ -1.38
RNF4P78317 ARL5AP2-201ENST00000444698 533 ntBASIC6.45□□□□□ -1.38
RNF4P78317 AC009948.1-203ENST00000450044 793 ntTSL 3 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms