Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FAM120B-203ENST00000537664 3212 ntAPPRIS ALT2 TSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 FHL1-217ENST00000539015 2310 ntTSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 TCF4-225ENST00000564999 3590 ntAPPRIS P3 TSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 ZNF430-201ENST00000261560 3923 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 AL365204.1-201ENST00000423440 1430 ntTSL 5 BASIC7.07□□□□□ -1.28
MSX1P28360 PPP1R1C-202ENST00000409137 3004 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 DIO2-210ENST00000557010 6367 ntAPPRIS P1 TSL 2 BASIC7.07□□□□□ -1.28
MSX1P28360 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 CKAP2L-201ENST00000302450 4533 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 CCDC125-203ENST00000396499 3615 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 CEACAM6-201ENST00000199764 2700 ntAPPRIS P1 TSL 1 (best) BASIC7.07□□□□□ -1.28
MSX1P28360 USP37-204ENST00000418019 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC7.06□□□□□ -1.28
MSX1P28360 TLR3-202ENST00000504367 2310 ntTSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 OR5BR1P-201ENST00000524992 1330 ntBASIC7.06□□□□□ -1.28
MSX1P28360 BRD8-203ENST00000402931 2982 ntTSL 5 BASIC7.06□□□□□ -1.28
MSX1P28360 AC027097.2-201ENST00000588925 1976 ntTSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 KIDINS220-202ENST00000319688 3765 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 KLHL5-203ENST00000381930 3288 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 AC092162.3-201ENST00000624511 1624 ntBASIC7.06□□□□□ -1.28
MSX1P28360 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 LINC00299-201ENST00000430192 1760 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 ARL4A-201ENST00000356797 1147 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 RNA5SP389-201ENST00000362610 115 ntBASIC7.06□□□□□ -1.28
MSX1P28360 RNA5SP226-201ENST00000362653 115 ntBASIC7.06□□□□□ -1.28
MSX1P28360 Y_RNA.132-201ENST00000363421 102 ntBASIC7.06□□□□□ -1.28
MSX1P28360 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 DYDC1-202ENST00000372204 750 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 C6orf48-201ENST00000375633 586 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 ALOX5AP-201ENST00000380490 904 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 SNORA75.4-201ENST00000391278 119 ntBASIC7.06□□□□□ -1.28
MSX1P28360 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC7.06□□□□□ -1.28
MSX1P28360 AL603766.1-201ENST00000407763 664 ntBASIC7.06□□□□□ -1.28
MSX1P28360 VN1R33P-201ENST00000411800 887 ntBASIC7.06□□□□□ -1.28
MSX1P28360 RPL12P27-201ENST00000414870 496 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC7.06□□□□□ -1.28
MSX1P28360 AL583805.2-201ENST00000418571 486 ntTSL 5 BASIC7.06□□□□□ -1.28
MSX1P28360 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.06□□□□□ -1.28
MSX1P28360 AC003071.2-201ENST00000423857 315 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC007559.1-201ENST00000428736 355 ntBASIC7.06□□□□□ -1.28
MSX1P28360 WWC3-AS1-201ENST00000430057 578 ntTSL 3 BASIC7.06□□□□□ -1.28
MSX1P28360 AC099344.1-201ENST00000433548 492 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AL590682.1-201ENST00000437248 344 ntBASIC7.06□□□□□ -1.28
MSX1P28360 CYP2C56P-201ENST00000440076 291 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC015983.1-201ENST00000441577 373 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AL121908.1-201ENST00000443055 668 ntTSL 4 BASIC7.06□□□□□ -1.28
MSX1P28360 MTND6P13-201ENST00000443510 523 ntBASIC7.06□□□□□ -1.28
MSX1P28360 RPSAP49-201ENST00000445182 886 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC092421.1-201ENST00000448148 418 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AL121877.1-201ENST00000453704 622 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC093166.4-201ENST00000457867 318 ntBASIC7.06□□□□□ -1.28
MSX1P28360 CTSLP6-201ENST00000458273 1002 ntBASIC7.06□□□□□ -1.28
MSX1P28360 LINC02045-201ENST00000460324 679 ntTSL 3 BASIC7.06□□□□□ -1.28
MSX1P28360 RPL5P15-201ENST00000475870 897 ntBASIC7.06□□□□□ -1.28
MSX1P28360 BTG4P1-201ENST00000510421 183 ntBASIC7.06□□□□□ -1.28
MSX1P28360 MYLK-AS2-202ENST00000515464 754 ntTSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 AC037450.1-201ENST00000518129 647 ntTSL 3 BASIC7.06□□□□□ -1.28
MSX1P28360 AP005902.2-201ENST00000518393 307 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AP004833.3-201ENST00000531893 322 ntBASIC7.06□□□□□ -1.28
MSX1P28360 SDHAF2-205ENST00000537782 559 ntTSL 4 BASIC7.06□□□□□ -1.28
MSX1P28360 LINC02423-202ENST00000542577 460 ntTSL 3 BASIC7.06□□□□□ -1.28
MSX1P28360 PCED1B-AS1-207ENST00000551432 522 ntTSL 5 BASIC7.06□□□□□ -1.28
MSX1P28360 AL355836.1-201ENST00000555951 870 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC7.06□□□□□ -1.28
MSX1P28360 MIR3137-201ENST00000577367 75 ntBASIC7.06□□□□□ -1.28
MSX1P28360 MIR4437-201ENST00000581331 60 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC7.06□□□□□ -1.28
MSX1P28360 AC022239.4-201ENST00000602626 504 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC007687.1-201ENST00000602704 304 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AL162413.1-201ENST00000603198 110 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC012507.3-201ENST00000603556 477 ntBASIC7.06□□□□□ -1.28
MSX1P28360 AC115286.1-201ENST00000604298 434 ntBASIC7.06□□□□□ -1.28
MSX1P28360 SPINK6-203ENST00000621437 605 ntAPPRIS P1 TSL 3 BASIC7.06□□□□□ -1.28
MSX1P28360 AC110994.2-201ENST00000635481 492 ntBASIC7.06□□□□□ -1.28
MSX1P28360 PRPS1L1-202ENST00000638645 957 ntAPPRIS P2 BASIC7.06□□□□□ -1.28
MSX1P28360 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 C1orf131-203ENST00000366651 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 MARK2P4-201ENST00000503381 2380 ntBASIC7.06□□□□□ -1.28
MSX1P28360 MRPS31P5-201ENST00000416599 3494 ntTSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 OR2T11-202ENST00000641193 3770 ntAPPRIS P1 BASIC7.06□□□□□ -1.28
MSX1P28360 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 CARF-202ENST00000402905 5938 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 MAP4-209ENST00000434267 2772 ntTSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 FSTL5-203ENST00000427802 2920 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 ATP2C1-208ENST00000504948 4714 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 CDKAL1-204ENST00000613575 1673 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 TCF12-206ENST00000543579 1809 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 AC023055.1-201ENST00000546837 1807 ntAPPRIS P1 TSL 2 BASIC7.06□□□□□ -1.28
MSX1P28360 MMP20-201ENST00000260228 1956 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 IFI16-205ENST00000368132 2704 ntAPPRIS ALT2 TSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 TRPM3-212ENST00000396283 3484 ntTSL 5 BASIC7.06□□□□□ -1.28
MSX1P28360 TBX5-AS1-201ENST00000528549 3620 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
MSX1P28360 NUTM2B-AS1-212ENST00000610681 4241 ntTSL 1 (best) BASIC7.06□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms