Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 OR2G6-201ENST00000343414 1049 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
COL8A1P27658 MIR135B-201ENST00000362189 97 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 FIG4-202ENST00000368941 791 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 Y_RNA.481-201ENST00000384373 102 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 RNU6-1222P-201ENST00000384615 107 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 TRAV38-1-201ENST00000390464 353 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
COL8A1P27658 MIR1284-201ENST00000408337 120 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 RN7SKP146-201ENST00000410242 334 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AC008154.2-201ENST00000420268 414 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 AL353678.1-201ENST00000422735 741 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 MTCYBP8-201ENST00000422855 651 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 AC002486.1-201ENST00000435098 391 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 RPEP4-201ENST00000437636 602 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AC007879.4-201ENST00000440545 361 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 LIN28AP2-201ENST00000445283 458 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 RPL7P12-201ENST00000446719 750 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AL353780.1-201ENST00000455583 458 ntTSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 ARPC3P2-201ENST00000457786 533 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 AP003438.1-201ENST00000518704 435 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 AP003100.1-201ENST00000524772 832 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 AC090673.2-201ENST00000544279 454 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 AC020661.3-201ENST00000558101 414 ntTSL 3 BASIC6.71□□□□□ -1.34
COL8A1P27658 DNM1P33-201ENST00000565222 270 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AC024267.2-201ENST00000582737 417 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AC064805.2-201ENST00000582959 523 ntTSL 4 BASIC6.71□□□□□ -1.34
COL8A1P27658 AC005837.2-201ENST00000587459 479 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 LAMTOR5-AS1-207ENST00000590826 574 ntTSL 4 BASIC6.71□□□□□ -1.34
COL8A1P27658 AC020914.6-201ENST00000594327 272 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AC247036.1-201ENST00000605005 389 ntTSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 AC073389.2-201ENST00000606726 571 ntTSL 4 BASIC6.71□□□□□ -1.34
COL8A1P27658 PPP3CB-AS1-215ENST00000620559 656 ntTSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 AC005609.2-201ENST00000623320 592 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 AP005242.3-201ENST00000623604 607 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 RACK1-235ENST00000626067 564 ntTSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 HEATR4-202ENST00000553558 3523 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 RECQL-203ENST00000421138 2572 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 AL035555.1-201ENST00000404462 1790 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 CCAR1-218ENST00000630771 4540 ntTSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 SLC12A6-201ENST00000290209 7286 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 RABGEF1-203ENST00000439720 3065 ntTSL 2 BASIC6.71□□□□□ -1.34
COL8A1P27658 ATM-201ENST00000278616 13147 ntAPPRIS P1 TSL 5 BASIC6.71□□□□□ -1.34
COL8A1P27658 ACO1-201ENST00000309951 7466 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 EIF4B-201ENST00000262056 4148 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 AC107982.1-201ENST00000507171 1300 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 NCOA4P2-201ENST00000340589 1813 ntBASIC6.71□□□□□ -1.34
COL8A1P27658 CWF19L1-201ENST00000354105 1815 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 ADA2-203ENST00000399837 4505 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 NEMP1-201ENST00000300128 5590 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
COL8A1P27658 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 OSBPL1A-202ENST00000357041 1869 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 CTAGE15-201ENST00000420911 2587 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
COL8A1P27658 VIT-203ENST00000389975 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 CCDC162P-202ENST00000368966 6751 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 STON2-201ENST00000267540 2977 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 AC104118.1-201ENST00000607625 1589 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AL353763.2-201ENST00000623489 1903 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 CYFIP2-221ENST00000618329 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 NASP-224ENST00000537798 3097 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 RNU6-702P-201ENST00000364982 107 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 RGS8-203ENST00000367557 859 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 AL450124.1-201ENST00000376401 353 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 DEFB109C-201ENST00000382575 264 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 DEFB109B-201ENST00000382656 264 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 SNORA51.12-201ENST00000384448 134 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 RPS3AP36-201ENST00000398190 775 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 TXNP7-201ENST00000406296 293 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 RN7SKP29-201ENST00000410957 272 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 RPL21P107-201ENST00000411449 460 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 GAPDHP49-201ENST00000421421 961 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 RPL35AP12-201ENST00000425362 338 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AL356583.2-201ENST00000426536 280 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 DLEU1-AS1-201ENST00000428276 731 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 AP1S3-208ENST00000446015 499 ntAPPRIS ALT1 TSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 XACT-201ENST00000468762 497 ntTSL 5 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC087385.2-201ENST00000477729 498 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
COL8A1P27658 ABHD10-204ENST00000494817 801 ntTSL 3 BASIC6.7□□□□□ -1.34
COL8A1P27658 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC6.7□□□□□ -1.34
COL8A1P27658 IL7R-204ENST00000506850 1004 ntTSL 2 BASIC6.7□□□□□ -1.34
COL8A1P27658 AC021220.1-201ENST00000507445 630 ntBASIC6.7□□□□□ -1.34
COL8A1P27658 AC008957.1-203ENST00000508745 589 ntTSL 3 BASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 77.2 ms