Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PSD3-218ENST00000523619 8145 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 ITSN1-206ENST00000381318 17015 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 LINC02183-201ENST00000637822 1732 ntTSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.19□□□□□ -1.58
COL5A1P20908 ZRANB3-202ENST00000401392 6820 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 LGALS8-220ENST00000526634 1852 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
COL5A1P20908 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
COL5A1P20908 AP000547.3-204ENST00000588548 2523 ntBASIC5.19□□□□□ -1.58
COL5A1P20908 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
COL5A1P20908 PRKDC-202ENST00000338368 12784 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC5.18□□□□□ -1.58
COL5A1P20908 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.18□□□□□ -1.58
COL5A1P20908 COX6CP17-201ENST00000421389 185 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 RIMKLBP2-201ENST00000424737 654 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 HNRNPDLP2-201ENST00000455248 751 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 SNORD125-201ENST00000459538 96 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 RPL7P16-201ENST00000479738 738 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.18□□□□□ -1.58
COL5A1P20908 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
COL5A1P20908 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
COL5A1P20908 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.18□□□□□ -1.58
COL5A1P20908 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 GJC1-207ENST00000590758 7566 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
COL5A1P20908 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 AL583808.2-201ENST00000418078 1382 ntTSL 5 BASIC5.18□□□□□ -1.58
COL5A1P20908 CASC19-221ENST00000641309 1382 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 AL078621.3-201ENST00000623707 2042 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 AC012618.3-205ENST00000637896 1496 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 CREM-202ENST00000342105 1541 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 RFX4-203ENST00000392842 3955 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 NAP1L1-227ENST00000618691 13505 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 THAP12P4-201ENST00000528321 2266 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 ANK2-201ENST00000264366 11775 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
COL5A1P20908 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.18□□□□□ -1.58
COL5A1P20908 BTBD10-210ENST00000530907 1871 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
COL5A1P20908 SRGAP1-206ENST00000543397 5652 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 LINC00702-203ENST00000608792 6300 ntTSL 4 BASIC5.18□□□□□ -1.58
COL5A1P20908 RN7SKP113-201ENST00000363891 295 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC5.18□□□□□ -1.58
COL5A1P20908 EI24P4-201ENST00000423683 1078 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.18□□□□□ -1.58
COL5A1P20908 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC5.18□□□□□ -1.58
COL5A1P20908 AC004980.4-201ENST00000513375 203 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 VNN2-207ENST00000525289 900 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.18□□□□□ -1.58
COL5A1P20908 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.18□□□□□ -1.58
COL5A1P20908 AL513327.3-201ENST00000602618 469 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 AC009597.2-201ENST00000604659 592 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.18□□□□□ -1.58
COL5A1P20908 AC010480.1-201ENST00000624823 684 ntBASIC5.18□□□□□ -1.58
COL5A1P20908 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL5A1P20908 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
COL5A1P20908 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
COL5A1P20908 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.17□□□□□ -1.58
COL5A1P20908 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 LINC00282-202ENST00000627246 4008 ntAPPRIS P5 TSL 2 BASIC5.17□□□□□ -1.58
COL5A1P20908 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.17□□□□□ -1.58
COL5A1P20908 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.17□□□□□ -1.58
COL5A1P20908 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.17□□□□□ -1.58
COL5A1P20908 RN7SKP145-201ENST00000363291 303 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
COL5A1P20908 MIR192-201ENST00000384915 110 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 CHMP1B2P-201ENST00000399581 597 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 AL078599.1-201ENST00000402075 293 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 COX6B1P1-201ENST00000415962 213 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 AL590139.1-201ENST00000416267 400 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 AL158827.1-201ENST00000416300 391 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC5.17□□□□□ -1.58
COL5A1P20908 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.17□□□□□ -1.58
COL5A1P20908 RN7SL188P-201ENST00000469842 285 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 RN7SL423P-201ENST00000486202 304 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 OR8Q1P-201ENST00000526467 655 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.17□□□□□ -1.58
COL5A1P20908 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.17□□□□□ -1.58
COL5A1P20908 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
COL5A1P20908 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC5.17□□□□□ -1.58
COL5A1P20908 AC013268.3-201ENST00000262716 2324 ntBASIC5.17□□□□□ -1.58
COL5A1P20908 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
COL5A1P20908 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms