Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL050403.1-201ENST00000448859 2006 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
LMX1BO60663 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.06□□□□□ -1.6
LMX1BO60663 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
LMX1BO60663 SELENOWP1-201ENST00000322792 252 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 SMARCA2-207ENST00000382186 955 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
LMX1BO60663 AL589655.1-201ENST00000405398 482 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC245060.4-201ENST00000413293 1121 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AL354890.1-201ENST00000413730 346 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC003991.1-210ENST00000434733 1048 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 CLUHP1-201ENST00000435012 1190 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 VN1R110P-201ENST00000438988 971 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AL606517.1-201ENST00000446914 387 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC073072.2-201ENST00000447425 348 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.06□□□□□ -1.6
LMX1BO60663 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.06□□□□□ -1.6
LMX1BO60663 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 ATG10-AS1-201ENST00000504846 648 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC027338.1-201ENST00000514840 825 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 IGLV2-28-201ENST00000520681 304 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC022404.1-201ENST00000555320 273 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 DPPA3P2-202ENST00000557188 1219 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AL136298.1-201ENST00000557371 566 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 AC016180.1-201ENST00000567945 403 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.06□□□□□ -1.6
LMX1BO60663 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC5.06□□□□□ -1.6
LMX1BO60663 AL357094.1-201ENST00000603845 844 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC112503.2-201ENST00000609005 552 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AL136228.1-201ENST00000622221 319 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 OR4G3P-201ENST00000633500 913 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 AC097655.1-201ENST00000635075 318 ntBASIC5.06□□□□□ -1.6
LMX1BO60663 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.06□□□□□ -1.6
LMX1BO60663 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 ARFGEF2-201ENST00000371917 8852 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 SEMA3A-201ENST00000265362 8225 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
LMX1BO60663 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
LMX1BO60663 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
LMX1BO60663 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 PFKFB2-202ENST00000367080 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
LMX1BO60663 CC2D2B-201ENST00000344386 1809 ntAPPRIS P3 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.05□□□□□ -1.6
LMX1BO60663 MIR7-1-201ENST00000384871 110 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 RNU11-201ENST00000387069 134 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
LMX1BO60663 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.05□□□□□ -1.6
LMX1BO60663 PTGES3P2-201ENST00000407942 482 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 RN7SKP278-201ENST00000410504 342 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.05□□□□□ -1.6
LMX1BO60663 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 BX284632.2-201ENST00000421091 399 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 PCBP2P1-201ENST00000437262 977 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 AL512605.1-202ENST00000441919 381 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AC023141.8-201ENST00000442554 208 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 AL359955.2-201ENST00000445380 353 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 OR6C72P-201ENST00000451403 892 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AC105021.1-201ENST00000455347 590 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 OARD1-207ENST00000468811 819 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 TSACC-207ENST00000470342 601 ntTSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 AL122020.1-201ENST00000472287 459 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
LMX1BO60663 PDCL3P4-201ENST00000489621 720 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 UBE2V1P12-201ENST00000503954 474 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AC093763.2-201ENST00000505334 1223 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 LINC00500-201ENST00000515860 539 ntTSL 4 BASIC5.05□□□□□ -1.6
LMX1BO60663 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.05□□□□□ -1.6
LMX1BO60663 IGLV3-30-201ENST00000524362 298 ntBASIC5.05□□□□□ -1.6
LMX1BO60663 AC134511.1-201ENST00000535721 192 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 RERG-AS1-201ENST00000541243 337 ntTSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 CACNA1C-IT1-201ENST00000542984 687 ntTSL 3 BASIC5.05□□□□□ -1.6
LMX1BO60663 ATF7IP2-206ENST00000543967 998 ntTSL 2 BASIC5.05□□□□□ -1.6
LMX1BO60663 AC103996.3-201ENST00000553477 442 ntTSL 3 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms