Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC009027.1-201ENST00000604510 479 ntBASIC5.76□□□□□ -1.49
SIX2Q9NPC8 AC104695.2-201ENST00000605056 775 ntBASIC5.76□□□□□ -1.49
SIX2Q9NPC8 AC109583.2-201ENST00000617367 129 ntBASIC5.76□□□□□ -1.49
SIX2Q9NPC8 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.76□□□□□ -1.49
SIX2Q9NPC8 AC127024.6-201ENST00000621598 424 ntBASIC5.76□□□□□ -1.49
SIX2Q9NPC8 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.76□□□□□ -1.49
SIX2Q9NPC8 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SIX2Q9NPC8 AP000641.1-201ENST00000531988 1639 ntBASIC5.76□□□□□ -1.49
SIX2Q9NPC8 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SIX2Q9NPC8 PCDH11X-202ENST00000361655 4126 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
SIX2Q9NPC8 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SIX2Q9NPC8 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SIX2Q9NPC8 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
SIX2Q9NPC8 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
SIX2Q9NPC8 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC002525.1-201ENST00000624392 1622 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 ARIH1-201ENST00000379887 21681 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 TMSB4XP4-201ENST00000323496 618 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 RNU1-146P-201ENST00000364015 165 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 RN7SKP124-201ENST00000364730 341 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC008164.1-201ENST00000423925 564 ntTSL 4 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 MRPS21P2-201ENST00000424704 264 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AL161636.2-201ENST00000445179 927 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC107072.1-201ENST00000449007 110 ntTSL 3 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 PRPF38AP1-201ENST00000451976 933 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC144530.1-201ENST00000452862 555 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC108161.1-201ENST00000461060 402 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 RPL7P41-201ENST00000485823 957 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 POLR2K-203ENST00000522439 543 ntTSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC027544.3-201ENST00000535082 757 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 YWHABP2-201ENST00000540201 713 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC008521.2-201ENST00000591021 259 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AL162431.4-201ENST00000604674 411 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC011626.1-201ENST00000604710 562 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC010245.2-201ENST00000606908 1167 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC015982.1-201ENST00000608113 465 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AC009135.2-201ENST00000624136 1768 ntBASIC5.75□□□□□ -1.49
SIX2Q9NPC8 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC5.75□□□□□ -1.49
SIX2Q9NPC8 EIF4E-203ENST00000450253 11523 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 NOS1-201ENST00000317775 12158 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 SOX9-AS1-202ENST00000414600 742 ntTSL 3 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 AL136455.1-201ENST00000441083 1240 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 RSL24D1P2-201ENST00000445584 366 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 RPL31P15-201ENST00000449770 338 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 AC104634.1-201ENST00000452720 462 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 OR7L1P-201ENST00000456181 380 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 RN7SL423P-201ENST00000486202 304 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 RPS24P16-201ENST00000497294 392 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 RN7SKP99-201ENST00000517028 307 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 NF1P10-201ENST00000613227 742 ntBASIC5.74□□□□□ -1.49
SIX2Q9NPC8 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.74□□□□□ -1.49
SIX2Q9NPC8 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 82.3 ms