Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 EI24P3-201ENST00000399046 1062 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AL391422.1-201ENST00000402155 436 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AL009179.1-201ENST00000406085 265 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC096921.1-201ENST00000411661 375 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 CBX1P3-201ENST00000413296 527 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 TNPO1P1-201ENST00000423641 1138 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AL360007.1-201ENST00000426166 349 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 OR6C71P-201ENST00000432580 913 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 VDAC2P4-201ENST00000452925 711 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AP000547.1-201ENST00000454360 617 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 LINC01448-201ENST00000455947 1171 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC023141.9-201ENST00000458734 412 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC092925.1-201ENST00000470739 493 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 RN7SL717P-201ENST00000478343 297 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC104109.1-201ENST00000498563 436 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC011389.1-203ENST00000513790 573 ntTSL 4 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 GAPDHP62-201ENST00000515313 990 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 RN7SKP253-201ENST00000516424 309 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC084824.2-201ENST00000548906 345 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 MRPS21P7-201ENST00000566937 238 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC009852.2-201ENST00000567898 485 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 MIR1273E-201ENST00000581165 102 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 LINC02033-201ENST00000623207 971 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AP003400.2-201ENST00000624036 666 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 AL691477.1-201ENST00000624398 162 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 AC003985.2-201ENST00000562268 1669 ntBASIC5.55□□□□□ -1.52
VPS35Q96QK1 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.55□□□□□ -1.52
VPS35Q96QK1 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.55□□□□□ -1.52
VPS35Q96QK1 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC004076.2-201ENST00000620532 3323 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC027279.4-201ENST00000624371 2072 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 MAPK10-328ENST00000641553 4009 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 RNA5SP326-201ENST00000363209 110 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 RN7SKP69-201ENST00000365390 305 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AL139095.4-201ENST00000379928 500 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC087752.1-201ENST00000391360 558 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 OR6E1P-201ENST00000414424 923 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 ITGA9-AS1-207ENST00000445429 532 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC104849.1-201ENST00000462623 405 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 OSMR-AS1-201ENST00000506463 800 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 RNU6-943P-201ENST00000516960 98 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC064802.1-201ENST00000521523 866 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 MOCS2-208ENST00000527216 707 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 RERGL-202ENST00000536890 367 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC012146.2-201ENST00000576545 416 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC104695.2-201ENST00000605056 775 ntBASIC5.54□□□□□ -1.52
VPS35Q96QK1 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC5.54□□□□□ -1.52
VPS35Q96QK1 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC5.54□□□□□ -1.52
VPS35Q96QK1 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms