Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
FOXA1P55317 VN1R12P-201ENST00000403778 876 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AL133388.1-201ENST00000404509 287 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.15□□□□□ -1.59
FOXA1P55317 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 RPL34P3-201ENST00000421454 338 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 PRUNEP1-201ENST00000425846 705 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 GAPDHP14-201ENST00000450472 937 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 RPS24P16-201ENST00000497294 392 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 PSMA2P2-201ENST00000504319 686 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 HMGB1P44-201ENST00000508597 572 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 SNORD46.2-201ENST00000516021 102 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AC138832.1-201ENST00000522871 556 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC5.15□□□□□ -1.59
FOXA1P55317 AC106730.2-201ENST00000566641 540 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC5.15□□□□□ -1.59
FOXA1P55317 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC5.15□□□□□ -1.59
FOXA1P55317 AC010503.3-201ENST00000594355 540 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 AC008833.1-201ENST00000611633 691 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
FOXA1P55317 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
FOXA1P55317 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
FOXA1P55317 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
FOXA1P55317 AC004817.4-201ENST00000602396 3625 ntBASIC5.15□□□□□ -1.59
FOXA1P55317 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
FOXA1P55317 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.15□□□□□ -1.59
FOXA1P55317 ZNF181-203ENST00000459757 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 SAMD13-201ENST00000370668 1403 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC5.14□□□□□ -1.59
FOXA1P55317 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 CCDC26-201ENST00000446592 1721 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 CD80-204ENST00000478182 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 MIR133B-201ENST00000362210 119 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 RNA5SP234-201ENST00000363916 119 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 MIR589-201ENST00000385238 99 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 OR2AT2P-201ENST00000413438 905 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.14□□□□□ -1.59
FOXA1P55317 HMGN2P27-201ENST00000427352 270 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 AC002069.1-201ENST00000429649 1159 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.14□□□□□ -1.59
FOXA1P55317 AC002504.1-201ENST00000438281 691 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 AL390119.1-201ENST00000440329 312 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 LINC01035-201ENST00000445072 784 ntTSL 3 BASIC5.14□□□□□ -1.59
FOXA1P55317 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.14□□□□□ -1.59
FOXA1P55317 AC105399.1-202ENST00000447303 205 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 AC104634.1-201ENST00000452720 462 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.14□□□□□ -1.59
FOXA1P55317 AC021660.1-201ENST00000465006 554 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 NDUFA5P5-201ENST00000468361 342 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 NPM1P28-201ENST00000492269 840 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 RN7SKP99-201ENST00000517028 307 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 AC024224.2-201ENST00000544225 782 ntTSL 3 BASIC5.14□□□□□ -1.59
FOXA1P55317 LINC02310-201ENST00000556762 572 ntTSL 4 BASIC5.14□□□□□ -1.59
FOXA1P55317 AC010547.6-201ENST00000571789 193 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 AC000068.2-201ENST00000608816 460 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC5.14□□□□□ -1.59
FOXA1P55317 AC007683.2-201ENST00000624681 714 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
FOXA1P55317 AL391117.1-201ENST00000640003 1186 ntTSL 5 BASIC5.14□□□□□ -1.59
FOXA1P55317 SYTL2-204ENST00000389958 1943 ntTSL 2 BASIC5.14□□□□□ -1.59
FOXA1P55317 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.14□□□□□ -1.59
FOXA1P55317 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC5.14□□□□□ -1.59
FOXA1P55317 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.14□□□□□ -1.59
FOXA1P55317 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
FOXA1P55317 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
FOXA1P55317 MAPK10-338ENST00000641647 3362 ntBASIC5.14□□□□□ -1.59
FOXA1P55317 ZEB1-201ENST00000320985 5423 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 DBT-202ENST00000370132 10799 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
FOXA1P55317 STXBP4-202ENST00000398391 2160 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
FOXA1P55317 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.13□□□□□ -1.59
FOXA1P55317 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 BMPR1APS1-201ENST00000403332 1598 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 AC103740.1-201ENST00000558888 7427 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 OR9K1P-201ENST00000326513 941 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
FOXA1P55317 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 RNA5SP122-201ENST00000384457 108 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
FOXA1P55317 RPL21P67-201ENST00000402896 478 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 RN7SKP16-201ENST00000410180 299 ntBASIC5.13□□□□□ -1.59
FOXA1P55317 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.13□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 108.3 ms