Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 RNA5SP326-201ENST00000363209 110 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 MIR105-1-201ENST00000385222 81 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 RNA5SP91-201ENST00000390902 119 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC6.41□□□□□ -1.38
SCN4AP35499 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 AC092570.3-201ENST00000420113 693 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 AC112498.1-201ENST00000444401 332 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 RPS4XP20-201ENST00000505751 772 ntBASIC6.41□□□□□ -1.38
SCN4AP35499 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.41□□□□□ -1.38
SCN4AP35499 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
SCN4AP35499 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC6.41□□□□□ -1.38
SCN4AP35499 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC6.41□□□□□ -1.38
SCN4AP35499 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.41□□□□□ -1.38
SCN4AP35499 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 MLH3-201ENST00000355774 7896 ntAPPRIS P1 TSL 5 BASIC6.41□□□□□ -1.38
SCN4AP35499 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
SCN4AP35499 EOGT-201ENST00000295571 4138 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC6.4□□□□□ -1.38
SCN4AP35499 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 KAT6B-204ENST00000372724 7106 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.38
SCN4AP35499 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 HEATR1-202ENST00000366581 6538 ntTSL 5 BASIC6.4□□□□□ -1.38
SCN4AP35499 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 SELE-201ENST00000333360 3857 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 FLG2-201ENST00000388718 9124 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.38
SCN4AP35499 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.4□□□□□ -1.38
SCN4AP35499 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.4□□□□□ -1.38
SCN4AP35499 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 TRAPPC2-203ENST00000380579 2776 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 GRIA4-204ENST00000428631 2778 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
SCN4AP35499 OR2G3-201ENST00000320002 930 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
SCN4AP35499 Y_RNA.126-201ENST00000363382 111 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 RPL10P10-201ENST00000403509 664 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 AC007064.3-201ENST00000422608 359 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 RPL34P27-201ENST00000428810 349 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 CNOT7P1-201ENST00000429006 852 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC6.4□□□□□ -1.38
SCN4AP35499 RPL34P20-201ENST00000442771 351 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 AC009963.4-201ENST00000448535 339 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 RBMY2TP-201ENST00000451162 947 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 TRBV5-2-201ENST00000489095 273 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 AC068789.1-201ENST00000547942 577 ntTSL 2 BASIC6.4□□□□□ -1.38
SCN4AP35499 MIR1254-2-201ENST00000579553 63 ntBASIC6.4□□□□□ -1.38
SCN4AP35499 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.4□□□□□ -1.38
SCN4AP35499 ELAVL4-202ENST00000371819 2467 ntAPPRIS ALT1 TSL 2 BASIC6.4□□□□□ -1.39
SCN4AP35499 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SCN4AP35499 OR2T2-202ENST00000641925 3530 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
SCN4AP35499 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC6.4□□□□□ -1.39
SCN4AP35499 TTI1-203ENST00000449821 3791 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
SCN4AP35499 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SCN4AP35499 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
SCN4AP35499 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.4□□□□□ -1.39
SCN4AP35499 AL117339.5-201ENST00000640275 3955 ntAPPRIS P1 TSL 5 BASIC6.4□□□□□ -1.39
SCN4AP35499 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 RTN4-203ENST00000357376 4110 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 TGIF1-204ENST00000400167 1352 ntTSL 3 BASIC6.39□□□□□ -1.39
SCN4AP35499 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 SETX-201ENST00000224140 11100 ntAPPRIS P2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 RPL32P3-201ENST00000359025 275 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 DBIP1-201ENST00000401435 260 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 CYP2AC1P-201ENST00000407830 1173 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AC116036.1-201ENST00000412199 367 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.39□□□□□ -1.39
SCN4AP35499 AP000770.1-201ENST00000444123 583 ntTSL 5 BASIC6.39□□□□□ -1.39
SCN4AP35499 AC012512.1-201ENST00000446594 718 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AL596266.1-201ENST00000448132 400 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC6.39□□□□□ -1.39
SCN4AP35499 AC140172.1-201ENST00000502928 141 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 ZNF346-IT1-201ENST00000515264 745 ntTSL 3 BASIC6.39□□□□□ -1.39
SCN4AP35499 RN7SKP253-201ENST00000516424 309 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 IGHVIII-47-1-201ENST00000518187 331 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SCN4AP35499 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC6.39□□□□□ -1.39
SCN4AP35499 AC091042.1-201ENST00000579213 173 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 RN7SL690P-201ENST00000582087 240 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 RN7SL356P-201ENST00000582228 248 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AL391358.1-201ENST00000605342 190 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AC019193.2-201ENST00000610012 634 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SCN4AP35499 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC6.39□□□□□ -1.39
SCN4AP35499 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC6.39□□□□□ -1.39
SCN4AP35499 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.39□□□□□ -1.39
SCN4AP35499 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC6.39□□□□□ -1.39
SCN4AP35499 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 DNHD1-212ENST00000527990 14298 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
SCN4AP35499 AC005703.1-201ENST00000431343 1773 ntTSL 2 BASIC6.39□□□□□ -1.39
SCN4AP35499 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms